Manihot esculenta (cassava): 110613446
Help
Entry
110613446 CDS
T05761
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03022
Basal transcription factors
mesc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110613446
09124 Replication and repair
03420 Nucleotide excision repair
110613446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110613446
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110613446
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110613446
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110613446
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Zn_ribbon_GTF2H2
Tfb4
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
110613446
NCBI-ProteinID:
XP_021610265
LinkDB
All DBs
Position
4:2823739..2827723
Genome browser
AA seq
411 aa
AA seq
DB search
MSTGEKRRLNGEAEEEDDDDIDGGLDAWERTYTDERSWEALEEDESGLLCPIDNKAIYHA
QYRRRLRSLSANAARIQKGLIRFLYIVVDLSRAASEMDFRPSRMVVITKHVEAFIREFFD
QNPLSQIGLVTIKDGVAHPLTELGGSPESHIKALMGKMECSGDSSLQNALDLVCGYLDQI
PSYGHREVLILYSALSTCDPGDIMESIQKCKKSKIRCSVIGLSAEMFICKLLCQETGGLY
SVAMDEAHFKELMLDHAPPPPAIAEFAIANLIKMGFPQRAAEGSIAICSCHKEAKVGDGY
ICPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPITPFDEVSPRQNTPLQRPPKTC
FGCQQSLLNPGNKLGLSVACPKCNQYFCVDCDIYIHESLHNCPGCESFRHS
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaggtgaaaagaggcgattgaatggagaggctgaagaagaagatgatgatgac
atagatggtggactcgatgcatgggagaggacttacaccgatgagagatcatgggaggct
ctggaagaggatgaatcaggactgctttgtcctatagacaataaggccatctaccatgct
cagtatcggcgacgccttcgttccctttctgccaatgctgctcgcatccagaagggcctt
attcgctttctttatatcgttgttgatctctccagggcagcatcagagatggattttcgg
ccaagtcgaatggttgtgatcacaaaacatgttgaggcttttattagggagttttttgat
cagaatccactcagccagattggtttggtaactataaaagatggggttgcacatccctta
acggagcttggtgggagtccagagtcccatattaaggctttgatgggaaagatggaatgc
tcaggtgattcctcactacagaatgccttagaccttgtctgcggatatcttgatcaaatt
ccatcatatggtcaccgtgaagtcctgatcttatattcagctctcagtacctgtgatcca
ggagatataatggagagcatccagaaatgcaagaaatctaaaataaggtgctcagttatt
ggtctttctgcagaaatgtttatatgcaaactcctctgtcaagaaactggtggattatac
tctgttgcaatggatgaggcccatttcaaagagttaatgctggatcatgcaccgccacct
ccagcaatagcagaatttgctattgctaacttgattaagatgggtttcccacagagggca
gccgagggctctatcgctatatgttcttgtcataaagaagctaaagtgggtgatggttac
atttgtccaagatgcaaggcacgtgtatgtgagcttcctactgaatgccggatttgtgga
ttgacactggtttcttcaccccatttggcaaggtcctatcatcatctctttcccattaca
ccatttgatgaggtgtctccacggcaaaatacgccacttcaaagaccaccaaaaacttgt
tttggctgccaacagagcctcctcaatcctggcaacaagcttggcctttctgttgcttgc
ccaaaatgcaatcagtacttctgtgttgattgtgatatttacattcacgagagcttgcat
aactgcccaggctgcgagagtttcagacattcatag
DBGET
integrated database retrieval system
