Manihot esculenta (cassava): 110613480
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Entry
110613480 CDS
T05761
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110613480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110613480
03009 Ribosome biogenesis [BR:
mesc03009
]
110613480
04131 Membrane trafficking [BR:
mesc04131
]
110613480
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mesc04147
]
110613480
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
110613480
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
110613480
Membrane trafficking [BR:
mesc04131
]
SNARE
SNARE associated proteins
Others
110613480
Autophagy
Aggrephagy
Other aggrephagy associated proteins
110613480
Exosome [BR:
mesc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110613480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_22
AAA_2
AAA_5
AAA_33
AAA_14
NPHP3_N
TIP49
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
AAA_17
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
Vps4_C
NB-ARC
TsaE
AAA_24
DUF815
Zeta_toxin
AAA_lid_PRS2_C
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
110613480
NCBI-ProteinID:
XP_021610328
LinkDB
All DBs
Position
4:2062872..2068293
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AA seq
834 aa
AA seq
DB search
MYTQTSTDFLFLFSSPKKALLLHDIPTSTMSHQAESSDSKSAKKDFSTAILERKKSPNRL
IVDEAVNDDNSVVSMHSETMEKLQLFRGDTILIKGKKRKDTICIALADDTCEPPKIRMNK
VVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPV
RKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVRREDEDRLDEVGYDDVG
GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF
CINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQ
LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKN
MKLSDEVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAV
TNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFG
MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR
QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD
IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADI
TEICQRACKYAIRENIEKDIEKEKRRSENPEAMDEDVEDEVAEIKAAHFEESMKFARRSV
SDADIRKYQAFAQTLQQSRGFGTEFRFSETRSSGATSDPFTTPAGGADDDDLYG
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtacacacaaactagcacggactttctttttcttttttcttcgccaaaaaaagctcta
cttctacacgatattccaacgagtacgatgtctcaccaagcggaatcttctgattcgaaa
tcggcgaagaaagacttctcgacggccattttggagcggaagaagtctcctaatcggctg
atcgttgatgaggctgttaacgatgacaattccgtcgtttcgatgcattcggagaccatg
gagaagctccagcttttccgcggtgataccattcttatcaagggaaagaaacggaaggat
acaatctgcattgctcttgctgatgacacctgtgagccgcccaaaatcaggatgaataag
gtcgttagatctaacctgagggttcgacttggagatgttgtatctgtgcaccaatgccca
gatgttaagtatggaaagcgtgtccacatactgcccattgatgataccatagaaggtgtc
actgggaatctgtttgatgcatacctgaaaccttatttcttggaggcatatcgcccagtg
aggaaaggggatcttttccttgttagaggagggatgagaagtgtagagttcaaggtcata
gaaactgatccaggagaatattgtgtggtcgcgccagatactgagattttctgcgagggg
gaacctgtgagaagggaggatgaggacaggctagatgaagtgggatatgatgatgttggt
ggtgttaggaagcagatggctcagatacgtgagttagtggagctgccgttgaggcatcct
caacttttcaaatcaattggtgtgaagccaccaaaaggaattttgctatatgggccccca
ggttcaggaaagacattgatagctcgagctgttgctaatgaaactggtgcatttttcttc
tgtatcaatggtcctgagataatgtccaagttggctggagagagtgaaagcaatctgagg
aaggcatttgaagaagctgaaaagaatgctccatccatcatctttattgatgagcttgat
tcaattgctcccaagcgtgagaagactcatggtgaagttgaaagacggattgtctcacag
cttttaactcttatggatgggctcaaatctagggcacatgtcattgtgattggtgccact
aatcgtccaaacagtattgacccagctttgagaaggtttggaaggtttgatagggaaata
gacattggtgtccctgatgaaattgggcgccttgaagttctacgaatccatacaaagaat
atgaaactctctgacgaggttgatctggaaaggattgcaaaagatacccatggctatgtt
ggcgctgaccttgctgccctatgtactgaagctgcactccaatgcatcagagagaagatg
gatgtgattgacttagaagatgattctattgatgctgagatacttaattccatggcagtt
acaaatgagcacttccaaactgcccttggaacgagcaacccatctgctttacgcgaaact
gttgtcgaagtgcccaatgttagctgggaggacattggtggtcttgagaacgttaaacgg
gagcttcaggagactgttcaatatcctgttgagcatccagagaagtttgagaagtttggc
atgtcaccttcaaaaggtgtcctcttctatggcccacctggatgtggaaaaaccctactg
gctaaagcaattgcgaatgaatgtcaggcaaacttcataagcgtcaagggtcctgaatta
ctaaccatgtggtttggtgagagcgaagccaatgttagagaaatttttgacaaggcccga
caatctgcaccatgtgtccttttctttgatgagcttgactctattgctactcagagggga
agcagcgttggtgatgctggtggtgcagctgatcgagtactgaaccaacttctcactgaa
atggatggcatgtcggcaaagaagactgttttcataataggggccaccaacagacccgac
attattgacccagcactcttgcgtcctggccgacttgatcagttgatttatattcctctt
ccagatgaagattcacgccatcaaatcttcaaagcctgtctgaggaaatcacctgtctcg
aaagatgttgatttgagggccttggccaagtatactcaaggattcagtggagctgatatt
actgaaatttgtcagcgggcatgcaaatatgccataagggagaatatagagaaggatatt
gagaaagagaagaggagaagtgagaatccagaggcaatggatgaggatgttgaggatgag
gtggctgagatcaaagccgctcattttgaggagtcgatgaaatttgctcgcaggagtgta
agtgatgctgacattcgtaaatatcaagcatttgcgcagacattgcagcaatctagggga
tttgggacagaatttaggttttcagaaacaaggagcagtggtgcaacatctgatcctttc
acaacaccagctggtggggctgatgatgatgatctctatggttag
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