Manihot esculenta (cassava): 110613565
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Entry
110613565 CDS
T05761
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110613565
Spliceosome [BR:
mesc03041
]
Common components
Common spliceosomal components
General mRNP proteins
110613565
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
110613565
NCBI-ProteinID:
XP_021610460
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All DBs
Position
4:27129000..27140066
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AA seq
602 aa
AA seq
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MEFDEYDYLEKTVENPEPHMAKDIANGDDVMKSGEKDSSRGSKHKSNEKDDGDDERHRSK
RSKSGDESRDRHKDRVSSRHRSRSRDGERDRQRSSREHRDKDRGRDRERDRDREERNGKE
RDRDRDRERDHDKDRRERDRDSEKDREKERERSRRSRSRSERRQSDLDERETEKSRDRDY
KERERERESRERDRESRRTKDRKEEVAEPEADPERDQRTVFAYQICLKADERDVYEFFSR
AGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLV
QSTTTVNAGSGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPLDETGHCKGF
GFVQFARLEDARNALNLNGQVEIAGRPIKVSTVTDQTGMQDGGTNAGDFDDDEGGGLALN
ARSRALLMQKLDRSGTASSIAGSLGTPVVSTGLPVPVAPILGAAPVVPPVVAPLMAGSVP
GLTGLAGAGVQLPASAIPSVDTIGIPSECLLLKNMFDPNVETEPDFDLDIKEDVQDECSK
FGSLRHIYVDKNSSGFVYLRFENTQSAINAQRALHGRWFAGKMITATFMVPQMYEAKFPE
SR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgatgagtatgattacctggaaaaaactgttgaaaaccctgaaccccatatg
gcaaaggatattgccaatggtgatgatgtcatgaagtcaggggaaaaagatagcagccgt
ggttcaaaacataagagcaatgagaaggatgatggggatgatgagcggcatcgctcaaag
cgctcaaaatctggagatgaatctcgtgaccgacacaaagatagggtttcatctcgtcat
cgttctcgatctagagatggagagagggatcgacagcggagtagccgagaacatagagat
aaggacagaggtagagatagggagagggatagagatagggaggagagaaatgggaaagag
agggacagggatagagatcgggagcgtgatcatgataaggacaggagggagcgcgaccgt
gacagtgaaaaggacagggagaaggaaagagagcggtcgcgtcgaagcaggagtcgatct
gaaaggcgtcagagcgatttggatgaaagggaaacagaaaagagccgtgacagggactat
aaagaaagagaaagggagagagagtcaagggaacgggacagagaaagcaggagaactaaa
gatagaaaggaagaagttgcagagccagaagctgatcctgaacgtgatcagaggacagta
tttgcctatcagatatgtttaaaggcagacgaaagagatgtctatgaatttttctcaagg
gctggcaaggtgcgagacgtacgtctcataatggatcgcaattcaaggaggtcaaagggg
gttgggtatattgagttctatgatgcaatgtctgtaccaatggccatagcactctctgga
cagcctcttcttggtcaaccagtaatggtgaaaccttcagaagctgaaaaaaatcttgtt
cagtcaactacaaccgtaaatgcaggatctggtccatactctggaggggctagaaggttg
tatgttggcaatctgcacttcaacataacagaagatcagcttcgtcaggtttttgaacca
tttggtgctgtggagttggttcaattgcctcttgatgaaactgggcactgcaaaggcttt
ggctttgtgcagtttgcccgtcttgaagatgctaggaatgccttgaatttgaatggacag
gtagagattgctggtcggccaatcaaggtgtcaactgttactgatcaaacgggaatgcaa
gacggtgggacaaatgctggtgattttgatgatgatgaaggcggtggcttggcattaaat
gcacgttctcgagctcttctaatgcagaaattggatcgcagcggcactgcctctagtatt
gctggttcactgggaacccctgttgtcagcactgggcttcctgtaccagtggcaccaatc
cttggtgctgcacctgtggtgcctcctgttgttgctcctcttatggcaggttctgttcct
ggtctaactggacttgcaggtgcaggtgttcaacttccagcttctgcaattccttctgtg
gatacaattggcatcccaagtgaatgtttattgttgaagaacatgtttgatcctaatgta
gagacggaaccagactttgatttggatattaaagaagatgttcaagatgagtgttctaag
tttggaagtttgaggcatatttatgtggacaaaaatagctcgggttttgtgtacttgcgc
ttcgagaatacacaatctgctataaatgcccagcgtgctcttcatggaagatggtttgct
gggaagatgatcactgcaacattcatggtgccccagatgtacgaggctaaattcccggag
agcagatag
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