Manihot esculenta (cassava): 110613676
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Entry
110613676 CDS
T05761
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110613676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110613676
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110613676
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
DSE1_N
Beta-prop_WDR90_POC16_2nd
ASA1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Aladin
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_SCAP
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_NOL10_N
Beta-prop_SPT8
NBCH_WD40
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_Vps41
PAC11
Beta-prop_HPS5
Tricorn_2nd
WD40_like
WD_LRWD1
Beta-prop_RIG_1st
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
110613676
NCBI-ProteinID:
XP_021610602
LinkDB
All DBs
Position
4:complement(35469345..35479109)
Genome browser
AA seq
727 aa
AA seq
DB search
MMYGDPQNQHQQPGGEFLRGPPPQPPMMRQLSSSSATLNPAEYYHNSSASEPPLPPYDAH
GDIFGAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTALQPTPAAAIDMLPTTAYS
DNPSTTFAAKFVHASLNKNRCSINRVLWTPNGRRLITGSQSGEFTLWNGQSFNFEMILQA
HDQAIRSMVWSHNDNWMVSGDDGGAIKYWQSNMNNVKANKSAHKESVRDLSFCRTDLKFC
SCSDDTTVKVWDFARCYEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRE
LCSFHGHKNTVLCVKWNQNGNWVLTAGKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP
FHEEYFVSGSFDGSIFHWLVGHETTQIEVTSAHDNSVWDLAWHPIGYLLCSGSNDHTTKF
WCRNRPGDPARDKFNMGQNQSYGEPNPALAGHLPGNFPLPEPPITPGPFAPGLTRNEGTI
PGVGAAMPLAIPSLDTSGQGEQKQSVPISMPLGAPPLPPGPHSSLLAANQQQGYQNNPQQ
MQQQQHQALPQQMPPLPMPPPNMQQLQPPSHLNLLPHPHIPRPPQVPPHGMPSPVPSSMP
GSLPVPSSMTASHPLQMPGPMGMQGTMNQMVPPVPRGHFMGMNPMHSGSLSTSAAAPVGA
FRNGLPNMQGPSNATGNQMYPQGGSFKRPQGGQMPMMPGFNPYQSGSQLGMPPPLQPGPP
PHSHTPQ
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggtgatcctcaaaaccagcaccagcagccgggaggagaattcctcaggggt
ccaccacctcagccgccgatgatgcgacagctctcatcctcttcagctactctcaatccc
gcggaatattaccacaactcctcagcctcagagcctcctctccccccttacgacgctcat
ggtgacatttttggtgcaaaaaggatgagaaagcttacccaaaggagagcagtcgattac
acaagtaccgttgtccgctatatgcagattcgtatgtggcagcgagattcaagagacaga
acagcattgcaacctactccagcagcagcaattgatatgttaccaacaactgcctattct
gacaatccatcaacaacttttgctgcaaagtttgtccatgcatctctaaacaagaatcgt
tgttcaattaatcgggttttgtggactcctaatgggagacgtctaatcacaggctctcaa
agtggggaattcactctttggaatggacagtcctttaactttgaaatgattcttcaggcc
catgatcaagcaatcaggtccatggtatggagtcataatgacaactggatggtctctggt
gatgatggcggtgcaattaagtactggcagagcaacatgaataatgttaaggctaataaa
tctgcacataaagaatcagttcgcgacttaagcttctgtaggacagatttaaagttctgt
tcttgctctgatgatactactgtgaaagtttgggactttgctcgatgctatgaagagcgt
tcattaactggccatggttgggatgtgaagagtgttgactggcatcctacaaaatcttta
ttggtctcaggtgggaaagataaccttgtaaaactttgggatgctaaaactgggagagag
ctttgctcatttcatggccacaaaaatacagtgctttgtgtcaaatggaatcaaaatggt
aattgggttctaactgctggaaaggatcaaatcattaagctttatgatattagagctatg
aaggagcttgaatctttccgtggacaccgcaaagatgtgactgcattggcttggcatcca
tttcatgaagagtattttgttagtgggagttttgatgggtccattttccattggcttgtt
gggcatgaaacaacccagattgaagttactagtgctcatgataatagtgtgtgggatctt
gcatggcatcctattggatatcttctttgcagtggtagcaatgatcacacaacaaagttt
tggtgcagaaataggccaggggaccctgctcgtgataaatttaacatgggtcagaaccaa
agttatggtgaaccaaaccctgcccttgctggtcacttgcctggtaattttcctctacct
gaaccaccaataactccaggaccatttgctcctggattgactcgaaatgaaggaaccatt
ccgggtgttggagctgcaatgccattagcaattccatctcttgatacatcaggtcagggg
gagcagaaacagtctgttccaatttctatgcctctaggagcccctcctctccctcctggc
ccacattcatctcttcttgctgccaatcagcagcagggatatcaaaataatcctcagcag
atgcagcaacagcaacaccaagctctccctcagcaaatgcctcctttgcctatgcctcca
ccaaatatgcagcagctacaaccaccttcacatttaaacctgctccctcatccccatata
cctcgccctccccaagttccccctcatggtatgccatcacctgttccatcttctatgcca
ggatccttgcctgtgccttcatcaatgactgcatcacacccattgcaaatgcctggtcca
atgggaatgcagggcacaatgaatcagatggtccctccagtgccacgaggccatttcatg
ggcatgaatcccatgcactcgggatccttatccacaagtgcagccgctccagtaggggcc
tttcgtaatggcctgccaaatatgcaaggcccatcaaatgcaaccgggaaccaaatgtat
ccacaaggtggatcatttaagcgaccacaaggtggacagatgccaatgatgccagggttt
aatccctatcagtctggtagtcaacttggtatgcctccaccactacaaccaggtcctccg
ccacattcccacacacctcagtag
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