KEGG   Manihot esculenta (cassava): 110613683
Entry
110613683         CDS       T05761                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5C
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03020  RNA polymerase
mesc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110613683
  09124 Replication and repair
   03420 Nucleotide excision repair
    110613683
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110613683
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110613683
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     110613683
  RNA polymerase III system
   RNA polymerase III
     110613683
  RNA polymerase I system
   RNA polymerase I
     110613683
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      110613683
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 110613683
NCBI-ProteinID: XP_021610610
LinkDB
Position
4:complement(35884362..35887204)
AA seq 226 aa
MAMEGRYGGGCGSVSKCMAEFVDQGSAESLRYYLSRKTILEMLRDRGYDVADLEVTRSLA
EFRVEFGDKPELKRLRISASLRSNQRRQILVVFMGSDEIRTAAIRGLLCQIPNKESLHGL
ILILQSKMNHFARKELDKLQCKVETFQITELLLNITKHVIQPTYEILTAELTQQLLNKYK
TEDKQLPRMLETDAIARYYGLEKGQVVKITCSGGLVDSLVTYRCVK
NT seq 681 nt   +upstreamnt  +downstreamnt
atggcaatggaaggccgttatggcggaggatgcggcagtgtgagcaaatgcatggcggag
tttgtggaccaaggtagcgcagagagccttaggtattacctctctcggaagacgattctg
gaaatgctacgagaccgaggctatgatgtggctgacttagaggttactcgctcgcttgcg
gagttccgagtcgagtttggtgacaaacctgagctcaaacgcctacgtatctccgcctct
ctacgctcaaatcagcgtagacagatattggttgtctttatgggctccgatgaaatcaga
acggcagctatccgtggtcttctttgccagattcctaacaaagaaagtttacatgggttg
atattgatattgcaaagtaaaatgaaccattttgcgcggaaagagttggataaattgcaa
tgtaaagttgagacttttcaaattactgaattgctgttgaatatcaccaagcatgttata
cagccaacatatgagatattgaccgctgaactgacgcaacagctgttgaacaagtacaag
actgaagacaaacagttgccaaggatgctagaaaccgatgctattgcacgatattatggt
ttggaaaaggggcaggtggtcaaaattacttgcagtggtggacttgttgattcccttgtc
acttaccgctgtgttaagtga

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