Manihot esculenta (cassava): 110613778
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Entry
110613778 CDS
T05761
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110613778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110613778
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110613778
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110613778
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
zf-C2H2_CASZ1_1
Motif
Other DBs
NCBI-GeneID:
110613778
NCBI-ProteinID:
XP_021610771
LinkDB
All DBs
Position
4:3471506..3477978
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AA seq
673 aa
AA seq
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MLLFLCLIVPWLSKSSLNSSASNLPDSNGRSFASSFSGQSGAGSPVFHHTGTIQGLHNIH
GSFNVPNMPGTLASRNSTISNVPSGGVQQPTGSLSSGRFASNNIPVALSQLSHGSSHGHS
GLTNRGGINVVGNPGFSSNTNGVGGSIPGILPTSAGIGNRNAVQGLGVSPILGNAGPRIT
SSMGNMVGGGNIGRSMSSGGGLSVPGLATRLNLTANSGSGNLSVQGQNRLMSGVLPQGSP
QVISMLGNSYPSAGPLSQSHVQAVNSLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSA
GGPQGQMGSLRKQGIGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYTMDMHQKEQLHDN
TMSMIQSQHFPMSRSAGFNLGGSYSSYRPQQQQQQHAPAVSSSGVTFSSVSNQDLLHGSD
IFPSSHSTYHSQNHGPPGIGLRPLNSPNTVSGMGSYDQLIQQYHQHQNQSQFRLQQISAV
NQPFRDQTMKSMQAAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENL
HKTFGSPWSDEPAKGDPDFSVPQCYYAKQPPVLHQGYFSKFTVETLFYIFYSMPKDEAQL
YAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNTYERGSYHCFDPNTFEIIRKDNFVVH
YEVLEKRPALPQH
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgtttctgtgcttgattgtcccgtggctttccaagtcttcgctaaacagttca
gcttcaaatcttccagatagtaatggacgttcttttgcctcttctttctctggccagtct
ggtgcaggatctcctgtttttcatcatactgggactattcaagggctgcataacatccac
gggagctttaatgtgcccaatatgccaggtacacttgcatcaagaaattctacaataagc
aatgttccttctggaggagttcaacaacctactggaagcctctctagtggtcgttttgca
tccaataacatacctgttgcgctctctcagttatctcatggcagctctcatggacattca
ggacttacaaatagaggaggtataaatgttgtaggaaatcctggatttagtagtaacaca
aatggagttggtggttctattcccggcattcttccaacctctgctggtattggtaaccgg
aatgctgtccaaggattgggagtatccccaattttggggaatgcaggtcctcggattaca
agttctatgggcaacatggttggtgggggcaacattgggaggagcatgagctcaggcgga
ggattgtctgtgcctggccttgcaactcggctaaatctaaccgcaaatagtggatctgga
aatttaagcgtgcaaggacaaaatagattaatgagtggtgtgcttccacaaggatctcca
caggtaatatccatgttgggaaattcatatccatctgctggtcctctttcacaaagtcat
gtccaagcagtgaacagccttagctccatgggaatgttaaatgatgtgaattccaatgac
agttccccttttgacataaataatgacttccctcagttgaccagtcgtcctagttctgct
ggggggcctcaaggacaaatgggttcgttgcgaaaacaaggtattggagttagccccatt
gttcaacaaaaccaagagttcagcattcagaatgaagactttccagctttaccgggattt
aaaggtggtaatgctgattacaccatggatatgcatcagaaagaacaactgcatgacaat
accatgtcaatgatacaatctcagcacttccctatgagcaggtctgctggattcaacttg
gggggaagttattcatcctatcgtccgcagcagcagcaacaacaacatgctccagctgtc
agtagtagtggtgttaccttttcttctgtaagcaatcaagatcttcttcatggttcagat
atatttccgtcttcacattcaacttatcactcacagaaccacggaccacctgggattgga
ctgagacctctgaactcgccaaatacagtttctggtatgggatcatatgatcaactcatc
cagcagtatcatcaacaccagaaccagtcccaatttcgattacaacaaatatcagctgtc
aatcagccattcagggatcagaccatgaaatccatgcaagcagcacaatctgctcctgac
ccatttgggttacttggtttgttaagtgttataaggatgagtgaccccgatcttacatca
ctggctcttggaattgatttaacaactcttggactaaatttgaattcaacagaaaatctt
cataagacatttggctcaccatggtctgatgagccagccaagggtgacccagattttagt
gtgccacaatgctattatgcaaaacaacctcctgttctacatcaaggatacttttcaaaa
ttcacagtggagacgttgttttatatattttatagcatgcccaaggatgaagctcagtta
tatgctgcaaatgaactttataatagaggctggttttatcacaaagagcaccggttatgg
ttcataagagtccccaatgtagagccacttgttaagacgaatacttacgagagaggatct
taccactgttttgatcccaatacattcgaaataatccgcaaggataattttgttgttcat
tacgaggtattggaaaagagaccggctctacctcaacattaa
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