Manihot esculenta (cassava): 110613846
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Entry
110613846 CDS
T05761
Name
(RefSeq) WD repeat-containing protein 43 isoform X1
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110613846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110613846
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
110613846
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Utp12
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR5
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
WD40
WDR55
Beta-prop_ACSF4
Beta-prop_WDR90_POC16_2nd
EIF3I
RMC1_N
Beta-prop_Nup120_160
WDR90_beta-prop_4th
Beta-prop_WDR3_2nd
Androglobin_II
DUF7523
Motif
Other DBs
NCBI-GeneID:
110613846
NCBI-ProteinID:
XP_021610894
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All DBs
Position
4:complement(31885690..31892425)
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AA seq
628 aa
AA seq
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MTKEKLKSVITSFTPEGDFLAVLSPNGTVKIWNTGNGSLLAEWKHSDDNPVNYSCMACSF
VGKKRKKGRGSFLLALGTSDGDISAIDAFTNDTKWKSSGCHPGGVIGLAFSNKGRTLHSI
GTNGMSSKMKSESGELIMEFKASKKPIAALSFSIDKQILAVASSKSKARVLSLENGKELL
KFPDDLGPELYISIANNAKSIITSDFREKNLQIWRCDLSSKSVSSGPVLPMRHTPLAFEC
KSTGEEKEDGLVVLAVSESGVCYVWNLNTISEDEVNPTKITVKGNNTETEKLKGESAKKS
RTSIFAAKLHDLEDDKQMTAVIAYGSIDSPQFSIVNIINSGENIVVNAVGETETARENGI
LPRKEVHDLESEAASSQNKKTKKKRAASDIEDVDTVNGEAMDGVLVEDDNEPTMGEKLAI
LNLQDIDKTKSPEKQESPPLAKPPSADSVNVVLKQALHAEDRALLLDCLYNQDEKVIANS
ISQLNPSDVLKLLHSLLTIIDSRGAILVCTLPWLRSLLLQHASGIMSHDSSLHALNSLYQ
LIESRSSTFRSALQLSSCLDFLYAGVVDDTSEENETVIPVIYEDKDESDEQESDEAMETD
QDSEEEEDEEEFGGLSDLEGGDNIDMSE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagagaaattaaagtctgtaatcacatctttcactcctgagggtgactttctc
gccgttttatctccaaatggaactgtcaaaatctggaatactggcaatggaagtttatta
gcagagtggaagcactcagatgacaaccctgttaattattcatgtatggcctgcagtttt
gttggaaagaagcgtaaaaaaggacgtgggtctttcttattggctcttggcacaagtgat
ggagatatctcggccattgatgctttcaccaatgacacaaagtggaaatctagcggatgt
catccaggtggagtcattggtcttgctttttccaataaaggccgtaccctgcatagcatt
ggaactaatggaatgtcatctaagatgaaatcagaatctggagagctgataatggaattc
aaagcatccaaaaagcccattgctgctttgtctttttctattgacaagcaaattttagcg
gtagctagcagtaagagtaaggcacgagttctgagcctcgagaatggaaaagagcttcta
aagtttcctgatgacttgggtccagagctgtatatttctatagctaataatgcaaagagt
attattacatccgattttagggagaaaaatcttcagatatggagatgtgatttgagttcc
aaaagtgtaagtagtggtcctgttcttcctatgcgacatactccattagcctttgaatgc
aagagtactggtgaagaaaaagaagatggtttggttgtcttagctgtatcagagtcgggt
gtatgctatgtttggaatttgaataccatctcagaagatgaggttaatcccacaaaaatc
acagtaaagggtaacaatactgaaacagagaagttgaagggtgaaagtgccaagaagagt
cgcacttcaatttttgctgccaaattacatgatctagaggatgacaaacagatgacagca
gttattgcttatggttcaattgattctccacagtttagcatagtcaacattattaactct
ggggagaacattgttgtcaatgctgtaggtgagactgaaactgctagagaaaatgggatt
ctccctaggaaagaggtccatgatttggaatcagaagctgcctcatcccaaaataaaaag
acaaagaagaaacgggctgcatctgatattgaagatgttgatactgttaatggtgaggct
atggatggagtcctcgtggaagatgataatgagccaaccatgggtgagaaacttgcaatt
ttgaatttacaagatattgataaaaccaagagccctgagaaacaggaatcacctcctttg
gcgaagccaccaagtgcagactcggtcaatgttgttctcaagcaagcattacatgctgaa
gatcgtgctcttctgctggattgcttgtacaaccaagatgagaaggttattgcaaattca
atctcccagcttaatccatctgatgtcctcaagcttttgcactctcttctaaccataatt
gattcgaggggagcaatcttggtgtgtacccttccatggcttagaagtttacttcttcaa
catgcaagtggaattatgtcccacgattcttctttgcatgccttgaactccttatatcag
ctcattgagtccagaagctcaactttccgatcagctcttcaactgtcaagttgcttagac
ttcctctatgcaggggtggttgatgatacatctgaagaaaatgaaaccgtaattccagta
atttacgaggacaaggatgaaagtgatgaacaagaatctgatgaggccatggaaactgat
caagatagcgaagaagaagaagatgaagaagaatttggtggacttagtgatcttgaagga
ggtgataacatcgacatgagtgaataa
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