Manihot esculenta (cassava): 110613917
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Entry
110613917 CDS
T05761
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110613917
09122 Translation
03013 Nucleocytoplasmic transport
110613917
03015 mRNA surveillance pathway
110613917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110613917
03041 Spliceosome [BR:
mesc03041
]
110613917
03009 Ribosome biogenesis [BR:
mesc03009
]
110613917
03012 Translation factors [BR:
mesc03012
]
110613917
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110613917
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110613917
mRNA cycle factors
Stress granule specific factors
110613917
Spliceosome [BR:
mesc03041
]
Complex C
Other components
EJC/TREX
110613917
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
90S particles
Helicases
110613917
Translation factors [BR:
mesc03012
]
Eukaryotic type
Initiation factors
eIF-4
110613917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
110613917
NCBI-ProteinID:
XP_021611024
LinkDB
All DBs
Position
4:complement(18385876..18390057)
Genome browser
AA seq
410 aa
AA seq
DB search
MAAAATSVVPAGRSARRAALEDDKLVFETTEGIEPITSFDEMGIKNDLLRGIYAYGFEKP
SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQLVDTSSREVQALILSPTRELAAQ
TEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVHVVSGTPGRVCDMIKRRTLRTRAI
RLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEMTSKFMTDPVKILV
KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNN
FTVSSMHGDMPQKERDAIMSEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELY
IHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcggcgacaagcgtagttccggcggggaggagtgcgaggagagccgctctg
gaagatgacaaattggtgttcgagactaccgaaggtattgaacctataaccagcttcgac
gagatgggcataaagaacgatctgcttcgcggaatttatgcctacgggtttgaaaagccg
tcggcaatacagcagagggcagttatgcccataatcaaaggacgggatgttatcgctcag
gcgcaatccggtaccggcaagacctccatgattgcgctcactgtttgccaactcgttgat
acctctagtagagaggtccaggcattgatattatcccctacaagggaactggcagctcag
acagagaaagtaatattagcaatcggtgattacattaatatacaagcacatgcatgtatt
ggaggcaaaagtgtgggtgaggatatcagaaagctggagtttggagttcatgtcgtatct
ggaactccgggcagagtctgtgacatgataaagaggaggacactgcgtactagagccatt
aggttattagttcttgatgagtctgatgagatgctgagcagaggattcaaggatcaaatt
tatgatgtatatagatatcttcctccagagcttcaggttgtattgatttctgctactctt
cccaatgaaattttagagatgacaagcaagttcatgacagatcctgttaagattcttgtg
aaacgtgatgaattgactttagagggtatcaagcaattttttgtagcagttgaacgggaa
gagtggaaatttgacacgctttgcgacctttatgatactctaaccatcacccaagctgtt
attttctgcaatacaaagcggaaggtggattggctaactgagaagatgcggagcaataac
tttacagtctcatcaatgcatggtgacatgcctcagaaggagagagatgcaattatgtca
gagttccgatctggtacaacccgtgtcctaatcacaactgatgtttgggcccgggggctt
gatgttcaacaggtttctttggtgatcaattatgacctaccaaataatcgagagctttac
atccatcgaattggtcgttctggtcgttttggacgcaagggtgttgcaataaattttgtg
aaaagtgatgatatcaagattttaagagatatcgagcagtattacagtacccagatcgat
gaaatgccaatgaatgttgctgatctcatctga
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