KEGG   Manihot esculenta (cassava): 110613920
Entry
110613920         CDS       T05761                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110613920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mesc03041]
    110613920
Spliceosome [BR:mesc03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    110613920
 Complex B
    110613920
 Complex C
   U2 SnRNP specific factors
    110613920
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 110613920
NCBI-ProteinID: XP_021611029
LinkDB
Position
4:25183650..25188527
AA seq 805 aa
MPGTAILPLPAPPPGGDSSPPPSQLSEQHSSKEDKTTNENQNKAPVATHTRTIGIIHPPP
DIRNIVDKTAQFVAKNGPEFEKRIIANNANNAKFNFLNPSDPYHAYYQHHLSEFRAQNQS
SAQQPPSQPADSDATESTQSAPASDGTDAAPKPDPTAQFRPPPRKVLDPPEAEQYTIRLP
EGITGEELDIIKLTAQFVARNGQAFLTGLTNREMNNPQFHFLKPTHSMFTFFTGLADAYS
KVLMPPKGLTEKLTKSVADMTTVLERCLHRLEWEHSQEQARQKAEDEIEQERIQMAMIDW
HDFVVVETIDFADDEDEDLPPPMTLEEVIRRSKVSSMVEDEVIEPGKEVEMEMDEEEVQL
VEEGMRAASLEENDSEKKFAKANEEPEEPMRIVKNWKRPEERIPAERDPTKVVVSPITGE
LIPINEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTT
EEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGRTANQAMSQNIIGEDQSEAGNDDARGL
PGPAAPPPRPGVPSVRPLPPPPGLALNLPRMPPNTIQYSAPTSGAFPVPPPRPPGMPMVP
SIRPMQAPMPVAPGQQPIMMNRQLTMPPSISGNPPSMPVPPPPGSQFTPIPRPFAPLPVP
PTAIGMMPPPPPLPQGMPPPPPPDDAPPPLPDEPEPKRQKLDSMLIPEDQFLAQHPGPVR
ITISVPNVDEGNLKGQVLEITMQSLSETVGSLKEKIAGEIQLPANKQKLSGKAGFLKDNM
SLAYYNIGAGEALSLSLRERGGRKR
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgcctggcacagcaatcttacctcttcctgcacctcctcctggcggagacagctctcct
cccccttctcaattgtcagaacagcattcttctaaggaagataaaacaacaaatgagaac
cagaacaaagccccagttgcaacacacactagaactattggaatcattcatcctccgcca
gatattaggaatattgtagacaaaactgcacaatttgttgctaaaaatgggcctgagttt
gaaaaaaggatcattgccaataatgctaacaatgccaagttcaattttttgaatccctca
gatccataccatgcatactatcaacatcatttgtctgaatttcgtgcgcagaatcaatct
tctgctcagcagcctccatcacaacctgcagattctgatgccactgagtctacccaatct
gctcctgcttctgatggcactgacgctgctccaaagcctgaccccacagcccagtttaga
ccacctcctcggaaagttcttgatcctcctgaagctgagcaatataccattcggcttcct
gaggggattacaggagaggaacttgatattattaagctcactgcccagtttgtggctcga
aatggccaagctttcttgactggtctgacaaatagggagatgaacaatccccagttccat
tttttgaagccaactcatagcatgttcacattttttactggactggctgatgcatactca
aaagtgttgatgcctcctaaggggttgactgagaagctgacaaaaagtgttgctgatatg
accactgtgcttgaacggtgtttgcatcgcttggagtgggaacactcgcaggagcaggcg
aggcagaaagccgaggatgagattgagcaagagaggattcaaatggcaatgatcgattgg
catgattttgttgtggttgagacaatagactttgcagatgatgaggatgaggacttgccc
cctcctatgacccttgaggaggttataaggaggagcaaggtatcttctatggttgaagat
gaagtcattgagcctggaaaggaggtggaaatggaaatggatgaagaagaggtgcaactt
gttgaggagggaatgagggctgccagtcttgaagagaatgacagtgagaagaaatttgcc
aaggcaaatgaggaaccagaagaacctatgagaattgtgaagaactggaagaggcctgag
gaaaggatccctgctgaaagggacccaacaaaagttgtggtttcccctatcactggtgag
ctaatacccattaatgagatgtctgagcatatgaggatttctctaattgatcccaagtac
aaggagcaaaaggaaaggatgtttgcaaaaatccgggaaacaactcttgctcaggatgat
gaaatctctagaaacattgtcggacttgcacggactcgacctgatatctttggcacgact
gaagaagaagtttctaatgcagttaaggcagagattgagaagaagaaagatgagcaacca
aagcaggtcatatgggatggtcatagtggaagcattggccgtactgcaaatcaagctatg
tctcaaaatattattggagaggatcaaagtgaagctggtaatgatgatgccaggggcctg
cctggtcctgcagctcctcctcctcgacctggtgtcccctcagttcgtcccctacctcca
ccaccagggctagcattgaatcttcctcggatgcctccaaataccattcaatactcggcc
ccaactagtggtgcatttcctgtgcctccaccaaggccaccaggtatgccaatggttcca
tcaattcgtccaatgcaggctccaatgccagtggcacctggacagcagcccattatgatg
aatcgacagcttacaatgcctccatctatatctggaaatccaccaagtatgccagttcct
cctccacctggatcccagtttacgccaattcctcgaccttttgctcctcttcctgtccct
ccaacagcaattggtatgatgccaccaccaccacccttgcctcaaggaatgcctccacca
cctccacctgacgatgctcctccaccacttccagacgaaccagagcctaagagacagaag
cttgattctatgcttattccagaagatcaattcctggcacaacatccgggacctgtacgc
atcactatttctgttccgaatgtggatgaaggaaatctcaaagggcaagttctggagatt
acaatgcagtccttgtctgaaacagttggcagcctgaaagagaaaattgctggagagatc
caacttcctgcaaacaagcagaaattgagtggaaaagctggtttcctaaaggataatatg
tcacttgcctactacaacattggagctggagaggcactgtctctttctttgagagagcgt
ggtggtagaaagagatga

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