Manihot esculenta (cassava): 110613955
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Entry
110613955 CDS
T05761
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110613955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110613955
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
110613955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
110613955
NCBI-ProteinID:
XP_021611086
LinkDB
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Position
1:complement(40075649..40086107)
Genome browser
AA seq
767 aa
AA seq
DB search
MDIYSSGEDLVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFSKLEKEAVAKGVPIRQALDIDIPPPRPKRKPSNPYPRKTGVCRTPLQVALK
DRELSDSVSLPHYKQALDLEKEPLPEKPDEDEKQTNSKENQEDNCSEVFTLLPEIHCPSV
CSANKNSVPTTEALRNSCSFREFVPTLKEVVNQDGNNESYVTIELQGNQKLDKSDVKQTV
QDNGTNRAAKLESCPFHEKLVQGKNSNEFNNALPIDEMEAMQNYPRHVPVHVLDGSLGTC
VQTPPSDVSFQESIRQPAEVHGHPNLYSNQAPSTTTEHQSNGPRSSTHQLLQTYPPPFTP
THHNQDDFRSFLHISSTFSSLIASTLLQNPAAHAAASFAATFWPYPNVETSADSPPCAQG
GFPSRQMHSAPSMAAIAAATVAAATAWWAAHGVLPLCAPLHSAFTCSPPATAVPSVDADQ
VPAAKTECKETTLKNPPLEDQQLDLEHSEALQAQNSASKESGCTKQNSVSKATDREMTVT
APEIDELGKLKNRKQVDRSSCGSNTSSSSEVETDALEKLEKDKEESKEADTNHLVTEFSN
RRSRSSSNLSDLWKEVSEEGRMAFQALFSREVLPQSFSPPHDLKNEAHQKVNVEDEQRTD
GKDGAALLLNLNSKTWGCCNSNHESDISLLPRCEYSGEDGLLTIGLGHGKLKARRTGFKP
YKRCSVEAKENRVVTASSQGGKGHEKPLHYFIQLSKGHQSLFITTYI
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggatatatattcctccggagaagacttggttattaagacaagaaaaccttatacaatt
accaaacaacgtgaacggtggacggaggaggagcataataggttcctagaggccttgaag
ctctatggacgagcttggcagcgcatagaagaacatatagggacaaagactgctgtgcag
atcaggagtcatgcacagaagtttttttcaaagttggagaaggaggctgttgctaaaggt
gttccaatacgacaagctcttgacatagacattccacctccacgtcctaagaggaaacca
agcaatccttatcctcgtaagacaggtgtgtgtcgtacaccattacaggtggcactgaag
gacagagagctttcggattcagtttctcttccacactataaacaagcattggacttggag
aaagaaccacttcctgagaaacccgatgaagatgagaagcaaacaaattcaaaagaaaac
caggaggacaattgctcagaagtctttactcttctcccagaaattcactgcccctctgtg
tgttcagcgaacaagaattctgtacccacaacagaggcactaagaaactcatgctctttt
agggagttcgtacctacactgaaggaggtggtaaatcaagatggaaataatgaatcttat
gttaccattgaacttcagggaaatcaaaagctggataagtctgacgtgaaacagacagtt
caggataatggcactaatagagctgcaaaattggaatcctgccctttccatgagaaatta
gttcagggaaagaattcaaatgaatttaataatgccttgccaatagatgagatggaagcc
atgcagaattatccaaggcatgtccctgtgcatgtgctagatgggagcttgggaacatgc
gtgcaaactcctccatcagatgtgtcattccaggaatccatacgtcaaccagcagaagtt
cacgggcatcccaatctgtactcaaatcaagctccatccactactactgaacatcaaagt
aatgggccaagatcttccacgcatcaattattgcagacttaccctccgccctttactcca
actcaccacaatcaagatgactttagatcatttctccacatttcctccacattttcgagt
cttattgcatctacattgctacaaaacccagcagcccatgctgcagcaagctttgcagct
accttctggccctaccctaatgtggaaacttctgcagattctccaccatgtgctcaagga
ggttttccatcaaggcaaatgcactcagctcccagtatggctgctattgctgctgctact
gtggctgctgcaactgcatggtgggcagctcatggagtacttccattatgtgcacctctc
cattctgcctttacatgttctccccctgcaactgcagttccatcagtggatgctgaccaa
gttcctgcagccaagacagaatgcaaggaaactactctcaaaaatccacctttggaagat
cagcaattggatcttgagcactctgaagctttgcaagctcaaaattcagcctctaaagag
agtggatgcacaaagcagaattctgtatcaaaagctactgaccgtgaaatgacagtaaca
gcacctgagattgatgaattaggcaaattgaaaaacagaaaacaggttgatcgttcttca
tgtggttcaaacacatcttctagtagtgaagtagagacagatgcattagagaagcttgag
aaagacaaggaagagtcaaaagaagctgatacaaatcatctggttaccgagtttagtaac
cgtcgcagtagaagtagtagcaacctgagtgatttatggaaggaggtatccgaagagggg
cggatggcttttcaagctctcttctccagagaggtcttgccgcaaagcttctctccacca
catgatctgaagaatgaggcacaccagaaggtcaatgttgaagatgagcagagaacagat
ggaaaagatggagctgcattgctgttgaatctcaacagcaagacatggggatgctgtaat
agcaatcatgaatcggatataagtttattgcctagatgtgaatacagtggggaggatggg
ctgctgacgattgggcttggacatggaaagctaaaggctcgtcgaacaggatttaaaccg
tacaaaagatgttcagtggaggccaaggaaaacagagtggtgactgccagcagccaagga
ggcaaaggacatgaaaagcccctccattacttcatacaattgagcaaaggacatcaaagc
ctcttcattactacgtatatttga
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