KEGG   Manihot esculenta (cassava): 110614034
Entry
110614034         CDS       T05761                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110614034
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110614034
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110614034
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110614034
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 110614034
NCBI-ProteinID: XP_021611176
LinkDB
Position
4:34458682..34462814
AA seq 128 aa
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAAEIKRAQKAEREATDLKGTMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcgggacctgaagatatttacctttctacttctcttgctagctatctcgat
aagaagctacttgtgcttctgcgagatggccgaaagctactgggaatactgcgttctttt
gatcaatttgccaatgctgttcttgagggtgcatgcgaaagagttattgttggtgatctc
tattgtgatatccctttaggtctatatgttatccgaggcgagaatgttgttttaattgga
gagctggatttggagagggaagaacttcctccacatatgacccgggtttcagcagcagaa
attaaaagggcacaaaaagctgaaagggaagctacggatctgaaaggtacaatgaggaag
agaatggagttcctcgatttggactag

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