Manihot esculenta (cassava): 110614059
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Entry
110614059 CDS
T05761
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110614059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110614059
Membrane trafficking [BR:
mesc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110614059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_Aladin
Beta-prop_WDR3_1st
WDR55
WD40_Gbeta
WD40_Prp19
Beta-prop_THOC3
zf_RING_Vps8
Beta-prop_HPS5
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
110614059
NCBI-ProteinID:
XP_021611216
LinkDB
All DBs
Position
1:complement(40127794..40138899)
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AA seq
1975 aa
AA seq
DB search
MTKKLTTPKLHTELDLDSFLNLHSDSDDDSTAIPHRTLDEILNDSDSSTSSSPPSPSSVK
IPQSRLSDLPLSVSDVVSDDSTGSLKCTQSQLLGDNSDQTRPNSFARAKSGGLSGDSVWR
APSSSRPLPSLFGGVRSNAKPGAALAAAAAASRSVPTPHAAAIKSRRAVSLQKVMDTGES
NSVVGDDHEIVSNSSTGDSIGVATERSRSDGKLGEEADNPGDFKSYLEDEISTRERNLET
TTEVFPSKDLAGEVEARNKMEQLRATRDEQDQLNATTSFSNSTVYLHLEDGSKNLGSDDG
KDEMIATVSSDGDSKFMDVNDSCKMDLISSSRDDDYGKLEWNSTEMPLEEGDYLGKDLNS
YEDDVAGSAIGGSGDACSISDISELVEERIEQLESERISKREQKKLRSTMKPLDLAEELE
KKQASTGLHWEEGAAAQPMKLEGVRRGSTTLGYFDIDATNAITRTIASQAFRRDHGSPQV
LALHLNYIAVGMAKGVIVVAPSRYSSYNTDNMDSKIVILGIQGDRSHAPVTSMCFNQQGD
LLLAGYGDGHITVWDVQRASAAKVITGEHMAPVVHAFFLGQDSQVTRQFKAVTGDSKGLV
LLHAFSMVPLLNRFTIKTQCLLDGQRTGTVLSASPLLFDESVGGALPSSQGNASLSSSSI
GNMMGGVVGGDTGWKLFNEGSSMAEEGVVIFVTHQTALVVRLTPTLEVYAQLSKPDGVRE
GSMPYTAWKCTTQSRSSSSDNSTADVAERVSLLAVAWDRKVQIAKLVKSELKVFGTWSLD
SAAIGVAWLDAHMLVVLTLTGQLYLFAKDGTVIHQTSFAVDGSAGDDLVAYHTYFMNIYG
NPEKAYHNCVAVRGASVYILGPMHLIVSRLLPWKERIQVLRRAGDWMGALNMAMTLYDGQ
AHGVIDLPRSVDAVQEIIMPYLVELLLSYVDEVFSYISVAFCNQIGKAEQDDQKSGCSSV
HSDIKEQFTRVGGVAVEFCVHIQRTDILFDEIFSKFVAVKHRDTFLELLEPYILRDMLGS
LPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYGALVYLFNKGL
DDFRAPLEELLIVSRSSDREKAAALGYRMLVYLKYCFSGLAFPPGHGAIPPTRLPSLRTE
LVQFLLEHSSAPNSQVALGLSSRGTYLNLYHLLELDTEATLDVLRLAFMDDENPKPQFTS
CDSANISINTEQQNITAIGNQNILVQNTLNALVQIIEKDASQTAEQASTDDTGPVEAWPS
MRDIGNLFEFIAYHVACGKACVSSSVLSQILEYLTSESTSSASIPAQVIKTSKRREKQVL
ALLEVVPVTDWNSSYVLQLCEKACFHQVCGFIHTMRNQYLAALDSYMKDVDEPIHTFSYI
NNILSQLSGNEWNAFQSAVMSRIPELVVLSREGTFLLVIDHFNSNNSHIFSLLQSHPKSL
FLYLKTVIEVHLYGTLNFSDLKKDDVLDAFSGRRVKDQLKGLETYLERISEFPKFIRNNP
VHVTDEMIELYMELLCQYERDSVLKFLETFDSYRVEHCLRLCQEYGITDAAAFLLERVGD
VGSALFLTLSGLNDKFAELDTAVESLISATLRGSAGIDCYSSVLKMKEVDEVHSILNSCI
GLCQRNTPRLQPEESEMLWFRLLDSFCEPLMDSYANKNALKESHGGMLAETLGEQEDDEP
IIKWKISRSHKGAHILRKLLSQFIKEIVEGMIGYVRLPTIMSKLLSDNGSQEFGDFKITI
LGMLGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSLICCICNCLLTKGSPS
YQIQVFSCGHATHLQCELLESDSLNKGSLSGCPVCMPKKNTQRPRDKSILPEKGSVNKGS
SRSRRSQGTSFLHLHEDSFESSQQISRFEILSNLQKDQRLFQIENIPQLRLAPPAVYHEK
VKEGPELLTGESSSGTSKVEKPSKRRQLRELKVTGSSLRFPLKSSIFGKEKLSRR
NT seq
5928 nt
NT seq
+upstream
nt +downstream
nt
atgactaagaaattgacaacccccaaactccacacggaactcgatctcgactctttcctc
aacttgcactccgactccgacgatgactccaccgccatccctcaccgtactcttgatgaa
attctcaacgactccgattcttccacttcatcgtcgcctccatccccgtcatccgttaaa
atcccccaatctcgcctctctgatcttcccctctccgtgagcgatgtagtctcagatgac
tccactggatccctaaagtgcacccaatctcagcttttgggtgataattctgaccagaca
cgacccaattcttttgctagggccaagtcgggaggtctctcaggtgattcggtatggagg
gctccttcttcatcgagacccttgccgtctttgttcggtggtgtgagatcaaacgcgaag
cccggggctgcgctcgcggcagcagctgcggcgtctcggtctgtaccgaccccgcatgct
gccgcgatcaagtcgagaagggcggtcagtctccagaaggttatggacactggagagtcg
aattccgttgttggtgatgatcacgagattgtttcaaattcatccactggggactcaatt
ggagttgctacggagagaagcaggtctgatggtaaattgggggaggaagctgataaccct
ggtgattttaaatcttatttggaagatgaaatttccacaagagagaggaatttagagacc
acgactgaggtttttcccagtaaagatttggcaggtgaagtagaagctaggaataaaatg
gaacaattaagagcgactagggacgagcaagatcagttaaatgccactacttcattttcc
aactcgaccgtttacttacatttggaagatggctcaaaaaatttgggttcagatgatgga
aaagatgaaatgatagcgactgtttcttctgatggcgattctaagtttatggatgtgaat
gattcttgcaaaatggatcttatttcctcttctagggacgatgactatggaaagcttgag
tggaattcaacagagatgccattggaagagggggattatttggggaaagatctcaatagc
tatgaagatgatgtggcaggtagtgctattggcggcagtggtgatgcctgttcaattagc
gacatttcagagcttgtggaggagagaattgagcaactcgaaagtgagagaattagtaaa
agagaacaaaagaaactcaggtccactatgaagccacttgacttagcagaagaacttgag
aagaagcaggcttctaccggtttgcattgggaggagggtgcagctgctcagccaatgaag
cttgagggtgtccggagaggatctactactttgggatacttcgacattgatgctaccaat
gccattacccggaccattgcatctcaagcatttaggcgagatcatggttccccgcaagtc
ctggctcttcatcttaactatattgcagtaggaatggcaaaaggcgttattgttgttgcc
ccaagtagatactcttcttataatactgacaacatggattcaaagattgtaatacttggt
atacaaggagataggtctcatgctccagtaacttccatgtgcttcaatcagcaaggggac
ctgcttttggctggttatggtgatggtcacattactgtttgggatgtccagagggcatca
gctgcaaaagtgataactggggagcatatggcacccgtagtacatgcattttttctaggc
caggattctcaagttactcgtcaatttaaagcagttactggtgacagtaaaggtctggtt
cttttacatgctttctcaatggttcctttgcttaacaggttcaccatcaaaacacagtgt
cttcttgatggacaaagaacaggcactgtactatctgcatctccccttctttttgatgaa
tccgttggaggcgctttgccatcatcacagggaaatgcttcactttcatctagcagcatt
ggtaacatgatgggaggtgtagttgggggagatacaggatggaaactattcaatgagggt
tcttctatggctgaagaaggtgtggtcatatttgtcacccatcaaactgctctggtggtt
aggctcacccccactctggaagtctatgcacaactttccaagccagatggagttcgggag
gggtccatgccttatactgcatggaaatgtactacacaatcacgtagttcatcatctgac
aatagtactgcagatgtggcagaacgagtttcattgcttgctgttgcatgggatcggaaa
gttcaaattgcaaagttggttaaatcagagctgaaagtatttggaacatggtctcttgac
agtgcagccataggcgtggcttggttggatgctcatatgctggtggttctcacattgaca
ggacagttgtatttgtttgcgaaggatggaactgtgattcatcagactagctttgctgtc
gatggctctgcaggagatgatcttgttgcatatcatacttattttatgaatatctatggg
aatcctgagaaagcctatcacaactgtgtagctgtaagaggagcttctgtatacatactt
ggtcccatgcatcttattgtctcccggcttctcccgtggaaggaacggattcaggttttg
cggagagcaggagactggatgggtgccttgaacatggcgatgacactttatgatggtcag
gctcatggtgttatagaccttccaagatctgtggatgctgtacaagaaatcataatgcct
tacttggtggagttgctattatcatatgtagatgaagtattttcttatatttcagtggct
ttttgcaaccaaattggaaaagctgaacaagatgaccaaaagagtggatgcagttctgtg
cactcagatataaaagaacaattcactcgtgttggtggtgttgcagtagaattctgtgtc
catatacagcggactgacatcctttttgatgaaattttctccaagtttgtggccgttaaa
catagagatacatttttggagctcctggagccatatatattgagagatatgcttggatcc
ctacctcccgagattatgcaagctctagtagagcattatagcagcaaagggtggttgcaa
cgagttgaacaatgtgtccttcacatggacatttcttccttggatttcaatcaggttgtc
agactatgccgggagcatggattatatggtgccttggtgtatcttttcaataaaggattg
gatgatttcagagcacctttagaggagttgttaatagtttcgcgaagtagtgatagagag
aaggctgctgcccttgggtacaggatgcttgtttatctgaagtattgcttttcaggtctt
gcctttccaccagggcatggagctattcctcctacgcgtttgccatctcttaggacagaa
cttgtccagtttttattagagcattccagtgctccaaattcacaagttgccttgggcttg
tcatcaagggggacatatctgaacctgtaccatctcttagaattagatactgaagctact
ttagatgttctgaggttggcttttatggatgatgaaaatccaaaacctcaattcacttca
tgtgacagtgctaacataagtataaacactgagcagcaaaatattacagcaattggaaat
cagaatatattggttcaaaatactctaaatgcccttgttcaaatcattgaaaaagatgca
tcccaaacagctgaacaggctagtactgatgatactggaccagtagaagcatggccttca
atgagagacatagggaacctatttgaattcattgcgtaccatgttgcatgtggaaaagct
tgtgtttcaagcagtgtgctgagtcagattttggagtacttgacatctgagagcacttct
tcagcaagtattcctgctcaagttatcaaaacttcgaaaagaagagagaaacaggtgctt
gcacttctggaggtagtgcctgtgactgattggaattcatcttatgtgttacagctatgt
gagaaagcatgctttcaccaggtttgtggcttcattcacactatgagaaaccagtatctt
gctgcattggatagctatatgaaagatgtggatgaaccaattcacaccttttcgtatatc
aacaatattttaagccagctaagtggcaatgaatggaatgcttttcagtcagctgtcatg
tctcggattccagagttggttgtactgagcagagagggaactttcttgttagtcattgac
cattttaatagcaataattcacacatcttctctctgctccagtctcatccaaaaagcctt
ttcctatatctaaagacggttattgaggttcacttgtatggaaccctcaacttttcagac
ttgaaaaaggatgatgtcctagatgcttttagtgggagaagagtgaaagatcagttgaaa
ggacttgagacttacttggaaagaatctcagaatttccaaagttcatacggaataaccct
gttcatgtgactgatgaaatgatagagctttatatggagttattgtgtcagtatgaacgt
gattcagttctcaaatttcttgagacttttgatagctatcgggtagaacactgtttgcgc
ttgtgccaggaatatggcataacagatgctgctgcctttttattggaaagggttggtgat
gttgggagtgcactttttctgacactttctggtctcaatgacaaatttgctgagcttgat
acagctgtagaaagtttgatttcagcaactttacgtggctctgctggcattgattgttac
agcagtgttttaaaaatgaaagaggttgatgaagtacacagtatattgaactcctgtatt
ggtttgtgtcagcgtaacactcctcgtctgcagcctgaggagtcagagatgctatggttc
agattacttgattcgttttgcgagcctttgatggattcatatgccaataaaaacgcattg
aaagaaagtcatggtggaatgctagctgaaacattgggtgaacaagaggatgatgagccc
ataatcaagtggaaaatctctaggtcccacaaaggtgcacatatcttgaggaaattgtta
tctcaattcatcaaagagattgttgaaggaatgataggatatgttcgccttcctacaatc
atgtcaaaactgctctctgataatggtagccaggaatttggtgattttaaaattaccata
ttggggatgctcggaacatatggctttgagaggaggattctggatactgccaagtccttg
atagaagatgatacattctataccatgagtttactcaagaagggggcatctcatgggtat
gcccctcggagtctcatatgctgtatatgcaactgccttctaaccaagggttctccgagt
taccaaattcaagttttcagttgtggtcatgcaacccatcttcaatgtgaacttcttgaa
agtgactccttaaataaaggttccttgtctggatgccctgtttgtatgcctaagaagaat
acccagcgacctagggacaaatcaatccttcctgagaagggttcagtgaacaagggttca
tcaagatccaggcgatcacaagggactagctttctacatcttcatgaagattcatttgag
agttcacagcaaatatcacggtttgagatcttgagtaatctacaaaaagaccagagatta
ttccagatagagaacatccctcagttgaggcttgccccgccagctgtttatcatgaaaag
gtgaaggaaggaccggagcttttgacaggagagagcagcagcggtacttcaaaagttgaa
aaaccgagcaaaaggaggcaacttagggaactgaaagtgacaggatcatctcttcgtttc
ccattaaaatcaagtatattcggcaaagagaagttaagtagacggtga
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