Manihot esculenta (cassava): 110614337
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Entry
110614337 CDS
T05761
Name
(RefSeq) uncharacterized protein LOC110614337 isoform X1
KO
K24155
rabconnectin-3a
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
110614337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110614337
Membrane trafficking [BR:
mesc04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
110614337
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
110614337
RAVE complex
110614337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
Beta-prop_EML
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
EIF3I
Motif
Other DBs
NCBI-GeneID:
110614337
NCBI-ProteinID:
XP_021611548
LinkDB
All DBs
Position
1:40504595..40518626
Genome browser
AA seq
2510 aa
AA seq
DB search
MSETMSSCHSTSTIDPTNHLPLSILRSDTVPPAPTRSGSTIDWLPEFAGYAWIAYGASSL
LVISHLPSPLSSDESLIGPILRQVFELSGDHSSAVTSVSWSPVTPSIGELAAASDSCIYV
FSHDSQSSKGSFCWSQNAVLLQCTKVEAIKWTGSGDGIVSGGIDVILWRRRNRSWEIAWK
FKRDEPQNLVSATWSIEGPSATAARPNNLLIKESSSESKCVLVCYGDSISEYEKFELRHP
QPVLMIQWRPPTERQPQRDAKYLVRNMLLTCCLDGTARLWTEVDNGKVRKFGKENNDRKT
TRKFFCVAAVIEINQVLNGNLGMDIFLNWAIESRGIYRTGEDINQFFSTERYRHGVGRCE
WLIGFGPGTVITFWAVHCLDDVSPMRFPRVTLWKRQELHGADFSKFKDSLLLNKVIILRN
CLSGPPEICSLVHLLPCNSLIWSLLHTQRSGDDENSLVNSSTIYKYSSCSAVQNGGHGGK
ILEVAMHPYIYELQLAASLDSNGLILFWFVSTMSNCNPELSTLTPTWKICGKFATHDSFS
KYTSLKWSPSVSDEDRVLLMGHVGGIDCFVVKLSQIEGGEDIICHFICTIPLTGHGPYED
NVLNIFAIPLPSTCNKTFRYNKFMLLGVSMKSFEALSWEVTLHSYDLPESTCGCNFDDQN
SHRFTWKFENTFANKRYCLGVNPCSSQFPEPYSHDQITSFSMVGPGNLIPTHEKLEFDRD
SCCSVPAYIMATGFSDGSLKLWRSNPSKLPTPHNQIPWELVGKFVAHQGPVNSICLTDCG
QKIATISAGSNTDGTSILHIWGSINLIGAGSFVLEDILSIDGDVVALKWLALGNGQLFLG
VCTHNNLQVYAQKHSGGQTVVNLGKSLNLKNWSCIAVTYTLPAIHDLLWGPQAAAIIVHD
DYFSLFSQWLFLVDDEQQAKCHPNFIGEDGEGAKDKCTPLSIFTDLDSISDLRKSSLPIK
IKDNIDFLSSSGQLKHGSHNLLGFWSLVEIAEKLVRTLPVYHPEALLMNLYSGNWKRAYV
SLRHLVEYLTSAHASEKKCSSGKKWHIVPQISLSNYFEGPILKDSMNKGFQWSADASASQ
IFVYDTVSNDSNHLFTSSTTSELCGFVEPIENMYELADLTNIEKLQILAIIDLLTEIQQS
ASAYENLDEPGQRFWVALRFQQLHYCRGFGRAPSVEELVVDTRLMSWAFHSDCQETLMSS
FLPSEPTWKEMQTLGVGFWFTNVAQLRTRVEKLARKQYLRKRDPKDCALLYIALNRLQVL
AGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIAFFLLGGDNYS
AITVCAKNLGDEQLALIICHLVEGQGGPLEHHLITKFMLPSAAERGDYWLASLLEWELGN
YLQSFLCMLGFQTSSVIDKYAVSSNHAAFMDPHIGLHCLKLASKSCMRNAVGEQNASVLS
RLATFMVATAFCRSGLPLEALECLSSSSSISGSMDQGSISDVDHSQILHGILKPAASDSL
NWLSGNVALHLESCTKLDLALQYFSKLMREHPSWPDSNLGSIQLSACFRDCEIHQYEELQ
KKFQENFYTGLSKFGQKFSVASPHLIKMILVWLCNNGLLFIGYDILLCYASVDHSKDESH
PVGNLVLYPLLHKPLLKSIQDISLLLSRFIVSCNITCLQQKSCDIENDVSGEVRSTWSNT
RGHFFQGIMPMLWSLRSAMRINCCFLSEDVTARSLVILDLYEFYVHFASAWLKKNSKGLL
LMVQPLLITCTNGHIPYEVDMSNLKNILYHIAELLASDLSVDDAGSGHAITKNDPCKLDR
GATRSFSEDEKWHIIGACLWQHMSRFVKHKLHSLSINLEDICFSGASHGITEQVVSFSQI
LSKLLMATLVHVSSYHVKVFGSSLLLKLENRFNIPTLAWLRESSPSQAKVLYQDASADIV
NSRDELSTFDILWATCADPSIIREGFAQEKINWPQFVNHRSSEDWSDLYKSIREDHETKE
VLDHEVRLGNNPVSDEVGSPAKGLFKGGRAFLTSWQKDSTNAREVTHFQTAKEIFKRDGE
LLEALCINSVSEGQAAISSNRKGIIFFNWEDGIPSADQSEYIWANADWPPNGWAGAESTP
IPTYVSPGVGLGSKKGAHLGLGGATLGMGSLARPRKELTGGGAFGIPGYAGIGASGLGWE
VQDEFEEFVDPPATMENISTRAFSSHPSRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA
ANVPPPFALASISALQFDHCGHRFATAALDGTVCTWQLEVGGRSNIRPTESSLCFNGHAS
DVTYVTSSGSVVATAGHSSNGANVVVWDTLAPPTTSQASIICHEGGARSISVFDHDIESN
SISPLIVTGGRGGDVGLHDFRYIATGRTKRHRHFDNCDGRSNMPSNMDLQAGVGEKVGDH
NQNGMLWYIPKAHLGSVTKITTIPHTSLFLTGSKDGDVKLWDAKAAKLVYHWPKLHERRT
FLRPSSRGFGGVVKVAVTDIQVVSHGFLTCGGDGLVKFLQIKDNQHEKFN
NT seq
7533 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaacaatgtcttcttgccactcaacctccaccatcgaccctactaatcatctt
cctctctctatccttagatccgacaccgttccacccgcaccaacccgatctggatccact
atcgactggctaccggaatttgctggttacgcatggatcgcctatggagcctcctccctt
ctggtgatttctcacctcccatctcctctctcctccgacgaatccctgatcggccctatt
ctccggcaagttttcgagctctctggcgaccattcatctgctgtcacttccgtttcttgg
tccccagtcacgccgtcgataggagagcttgctgctgcgtcagacagctgcatctacgtg
ttctcacatgattcccaaagctccaaaggttctttttgttggagccagaatgcagtactt
ttacagtgcacaaaggtggaagcaatcaaatggactggctccggggacggaatagtttct
ggcggaattgatgtgattttgtggagaaggagaaacaggtcatgggaaatagcttggaag
tttaagagagatgagcctcaaaatctggtttctgcaacctggtcaattgagggaccctca
gcaactgctgcccgtccaaataacctgcttattaaagaatctagcagtgagagcaaatgt
gtgctagtatgttatggcgacagtatatctgaatatgaaaaatttgagctgcgacatcct
cagcctgtcctgatgattcagtggaggccaccaacagaaagacaaccacaaagagatgca
aaatatttggtacggaatatgctattaacttgctgcctagatggaactgcaaggctgtgg
actgaggtagacaatggaaaggtcagaaagtttggcaaggaaaataatgatcgcaaaaca
acaaggaaattcttttgtgttgctgctgtaattgagattaaccaggtgttgaatggtaat
ttgggcatggatatatttttgaactgggcaatagaaagtagaggtatatacagaactgga
gaagacattaatcagttcttctccactgaaaggtataggcatggagttggcagatgtgag
tggttaattgggtttggtccaggaactgtaatcactttttgggccgtgcattgccttgat
gatgtctcacccatgaggttccctcgtgttacactatggaagagacaagaactgcatgga
gctgatttttcaaaatttaaggattctttacttcttaataaggtcattatcttgaggaac
tgcttgtctggtccacctgaaatatgctctttggttcatttattaccttgtaattccttg
atttggtctctgttgcatactcaaagatctggtgatgatgagaactcattagtgaacagt
tccacaatatacaagtactcatcatgttcagctgttcaaaatggtggacatggtggaaaa
attttagaagttgctatgcatccttatatttatgaacttcaattagctgcttctttggac
tctaatgggttgattctattttggtttgtatcaaccatgtcaaactgcaatccagaactt
tcaacattgactcccacatggaaaatttgtgggaaatttgcaactcatgattcattttcc
aagtatacaagcttgaagtggtcaccttctgtttcagatgaagaccgtgtacttcttatg
ggacatgttggggggatagattgctttgtagttaagctttctcaaattgaaggaggagaa
gacataatatgtcattttatatgcaccatacctctaacaggtcatggtccttacgaggat
aatgtcctcaatatctttgcaataccccttccttctacctgtaacaagacatttaggtac
aataaatttatgcttttgggggtatcgatgaaaagctttgaagctttatcatgggaggtc
actttacattcctatgacttaccagagagtacctgtggatgtaattttgatgatcaaaac
agtcatagattcacatggaaatttgaaaatacttttgccaataaaagatactgtcttggt
gttaacccttgctcatctcagtttccggagccttattctcatgatcagattactagtttt
tctatggtaggtccaggtaacttgattcctacgcatgaaaaacttgaatttgacagagat
agttgctgcagtgtccctgcctatattatggctacaggcttctctgatggtagcttgaaa
ctgtggagaagtaacccttctaaattgccaacccctcacaatcagataccatgggaactt
gtaggtaaatttgttgcacatcaaggccctgttaattctatatgtttgaccgactgtggt
cagaagattgctaccatctctgcagggagtaacacagatggcactagcattcttcatatt
tggggcagcataaaccttataggagctggaagttttgtgttggaagatatattatccatt
gatggagatgttgtggctttaaagtggttagctttaggtaatggtcagttatttcttggg
gtttgcacacacaataatttgcaggtatatgctcagaagcattctggtggtcagacagta
gtgaaccttggaaaatctttgaacctgaaaaattggtcttgtattgcagttacttatact
ttgcctgctattcatgacttgctttgggggccgcaggctgcagctattattgttcatgat
gattactttagtctatttagtcagtggttgtttcttgtagatgatgaacaacaggccaaa
tgccatccaaattttattggggaggatggtgaaggtgcaaaagataaatgcactcctttg
tcaatattcactgatctggatagcatcagcgatctcaggaaatcatcacttcccataaag
attaaagataatattgatttcctatcaagcagtggtcagctaaaacatggttcacataac
ttgcttggtttttggagcctggtagaaatagcagagaagttagtgagaactttacctgtt
tatcatcctgaggctctccttatgaatttatattcaggcaactggaaacgtgcatatgta
tctttgaggcatcttgttgaatatcttacttctgctcatgcttctgagaaaaaatgtagt
tctggaaagaaatggcatattgttccacagatttctttatcgaactattttgaaggacct
atcttgaaagattcaatgaataaaggttttcaatggagtgctgatgcttcagcttcacag
atttttgtgtatgacactgtgtccaatgactccaatcatttgtttacttcatctacaaca
tctgagctttgtggttttgtggagcctattgagaacatgtatgagttagcagatttaact
aatattgagaagttgcaaattcttgctattatagatcttctcactgaaattcagcaatct
gcttctgcctacgaaaatcttgatgaacctggccaaaggttttgggttgctttaaggttt
caacaattacattattgtcgaggctttggtagggcaccatcggtggaagaattggttgtt
gacactagactaatgagttgggccttccactctgactgtcaggaaactttgatgagttct
tttcttcccagtgaaccaacctggaaagaaatgcagactcttggagttggattttggttt
accaatgttgcacaactacgcacaagggtggaaaaattagcaagaaagcagtatctaaga
aagagagatcccaaagattgtgcccttttatacattgcattgaatagacttcaagtcttg
gctggtctttttaaaatcagcaaagatgaaaaggacaaacccttggtgggatttctttct
cgcaattttcaggaggagaaaaataaagcagctgctttaaaaaatgcttacgtcttaatg
ggaaaacatcaactggagctagctattgctttctttctacttggaggtgataattattct
gcaatcactgtttgtgcaaagaatcttggagatgaacaacttgcattgatcatttgccac
cttgttgagggtcaaggtggaccattagaacatcacttaatcaccaagtttatgcttcca
tctgcagctgagagaggcgattactggcttgcaagcctgcttgagtgggaactgggcaat
tacttgcaatcttttctatgcatgcttggtttccaaactagttctgtgattgacaaatat
gctgtttcatccaatcacgctgcttttatggatccccatattggtctgcactgcctcaaa
ttagcaagcaaaagttgcatgagaaatgccgtaggggagcaaaatgcttcagttctcagt
aggttggcaacttttatggtggctactgccttctgtagaagtgggcttcctcttgaagct
ttagagtgcctctcatcttcctccagcatttctgggagtatggatcaagggagtatatca
gatgttgatcattctcaaattctacatggaattttaaagccagctgctagtgattcgctt
aattggttgtcaggcaatgtggctttgcatttggagtcctgtactaaattagatttggct
cttcagtatttctcaaaattgatgagggagcatcctagttggcctgactctaacttagga
tccattcaactgtccgcatgcttcagggattgtgagatccatcaatatgaagaattacaa
aaaaagtttcaagaaaatttttatacaggactttcaaagtttgggcagaagttttcagta
gcttctcctcacctaatcaaaatgattttggtctggttgtgcaataatggattactgttt
attggatatgatatattactctgctatgcttctgtagatcactcaaaagatgagagccat
cctgttggcaatttagtcttgtatcctcttctccataagccacttttgaaatccattcaa
gatatttcacttttactttcacggtttattgtctcctgtaatataacttgcctgcaacaa
aaatcatgtgatattgagaatgatgtgtctggtgaagttagatccacatggtccaatact
cgggggcatttctttcaaggtatcatgccaatgttgtggagtttaagaagtgctatgagg
ataaattgttgcttcttatctgaggatgtgactgcaaggtcccttgttatccttgattta
tatgaattttatgtacattttgcatctgcttggcttaagaaaaattcgaaaggtctcttg
ttgatggtgcagccactcttgatcacttgtaccaatgggcatatcccatatgaagttgat
atgtcaaatctcaaaaacatcctttaccatattgcagagttgttggctagtgatttgtct
gtggatgatgcaggatcagggcatgcaattaccaaaaatgacccatgtaaactggacaga
ggagcaacacgctcattttcagaagatgagaaatggcatattataggggcttgtttgtgg
cagcacatgtccagatttgtgaaacataagctgcattcgctatccattaatcttgaagat
atatgcttctctggagcttcccatggcataacagaacaagttgtatcattctcacagata
ttatctaagttactgatggccacactcgtacatgtttcatcttatcatgtgaaagtgttt
ggctcatccctgctactgaagctagagaatagatttaacataccaactcttgcatggcta
cgagagtctagtccatctcaagccaaagtcctctatcaggatgcaagcgcagacatagtg
aacagcagagatgaattatcaacttttgacatattatgggccacctgtgccgaccctagc
ataataagagaaggttttgcgcaagaaaagataaattggccacaatttgtcaatcacaga
tcctctgaagactggagtgatttatataagagcatcagagaggaccatgaaaccaaggaa
gttctagatcatgaagtgaggttaggcaataatcctgtcagtgatgaagttggatcacct
gctaagggtttatttaagggtggccgagcttttctaacttcatggcagaaggactcaacc
aatgccagggaggtgacacatttccaaactgctaaagaaatatttaagagagacggagag
ctgttggaggcactctgtattaattctgtcagcgaagggcaagctgcaatttccagcaac
agaaagggcataattttctttaattgggaagatgggattccttctgcagatcaatcagaa
tatatctgggctaatgctgattggccaccaaatggttgggcaggtgctgaatcaactcca
attccaacttatgtttctccaggtgttggtcttgggagcaagaaaggagcacaccttggg
ttgggtggggcaacccttggcatgggttctttagcaagaccaaggaaagaattgacaggt
ggtggagcatttggtattccaggttatgctggtattggtgcctctggcttaggttgggaa
gtacaggatgaatttgaggagtttgttgacccaccagctaccatggaaaatataagtaca
agggctttctctagtcacccgtcaagacccttttttttggttggttccagcaatacacac
atttacttgtgggagtttggtaaggacaaagctactgcaacttatggtgttctccctgct
gcaaatgttcctccgccatttgcccttgcatcaatatcggctttgcagtttgaccactgt
ggacacagattcgctacagctgcattagatggaactgtatgcacatggcagcttgaggtt
ggaggaagaagcaacatccgcccaacagaatcatctctctgctttaacggccatgcatcg
gatgtcacatatgttacctcaagtggatcagttgttgctactgctgggcacagctccaat
ggtgctaatgtagttgtctgggatacattggctccacccacaacgtcgcaggcttcaatt
atttgtcatgaaggtggtgcccgctccatttcagtgttcgatcatgatattgaaagtaat
tccatatctcctcttattgtaaccggtggtagaggtggtgatgttggactgcatgacttt
cgatacatagcaactggaaggactaaaaggcataggcattttgataattgtgatggaaga
agcaatatgccttctaatatggacttgcaagcaggggttggtgagaaagtgggtgaccac
aatcagaatgggatgctttggtacataccaaaggctcacttaggaagtgtcaccaaaata
accaccatccctcataccagcttattcttaactggaagcaaagatggggatgttaaactt
tgggatgccaaagcagccaaactggtttatcattggcccaagttgcatgaaaggcgcacc
tttttgcgaccaagctcacgtggttttggaggagttgttaaggttgcagtaactgacata
caagttgtttctcatggttttcttacttgtggtggggatggcttggtaaagttccttcag
attaaagataaccaacatgaaaagttcaactaa
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integrated database retrieval system
