KEGG   Manihot esculenta (cassava): 110614535
Entry
110614535         CDS       T05761                                 
Name
(RefSeq) chromatin structure-remodeling complex protein BSH
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03082  ATP-dependent chromatin remodeling
mesc03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110614535
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    110614535
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mesc01009]
    110614535
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110614535
   03036 Chromosome and associated proteins [BR:mesc03036]
    110614535
Protein phosphatases and associated proteins [BR:mesc01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     110614535
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     110614535
    SWI/SNF complex
     110614535
Chromosome and associated proteins [BR:mesc03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    110614535
   PBAF complex
    110614535
   SWI/SNF complex
    110614535
SSDB
Motif
Pfam: SNF5
Other DBs
NCBI-GeneID: 110614535
NCBI-ProteinID: XP_021611782
LinkDB
Position
5:21030066..21034990
AA seq 240 aa
MKFLPPTSSKAPVKFRMPTAENLVPIRLDIELDGHRFKDAFTWNPSDPDSEVVVFAKRTA
KDLKLPPAFVMQIAQSIQTQLTEFRSYEGQDMYTGEKIVPIKLDLRVNHTLIKDQFLWDL
NNFDSDPEEFARTFCKDLGIEDPEAGPAIALAIREQLYEIAIQSVATARESRLSKKGRRG
FEYIPAHKAGGTALDLMKLFSNKYSVVRKRKEWDVYEPIVDLLSTEEVDALEAREERNAR
NT seq 723 nt   +upstreamnt  +downstreamnt
atgaaattcctgccacctacgtcttcgaaagcacctgtcaagttcaggatgccaacagcg
gagaatttagtaccaattcgattggacatagaacttgatggccaccgcttcaaagatgct
ttcacttggaacccttctgatcctgattctgaggtggtggtattcgccaaaaggactgca
aaagacttgaagctacctcctgcttttgttatgcagattgctcagtccattcagacacaa
ttgaccgagtttagatcctatgaaggccaggatatgtacactggcgagaaaattgttcca
atcaagcttgatcttcgggtgaatcacactcttatcaaggatcagtttttgtgggacttg
aacaactttgatagtgatcctgaagagtttgctagaaccttttgtaaagatttgggaatt
gaagatcctgaagctggacctgcaattgctttagcaattagggaacagctgtatgagatt
gcaattcaaagtgtagctacagcaagggaaagcagattaagtaaaaaaggtcgccgtggc
tttgaatatattcccgctcataaagcagggggtactgcattggatttgatgaagttgttc
agtaataaatacagtgtggttaggaaaaggaaggaatgggatgtatacgagccgattgtt
gatctcctatcaactgaggaagtggatgcccttgaagcaagggaggaaaggaatgcgcgg
tga

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