Manihot esculenta (cassava): 110614649
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Entry
110614649 CDS
T05761
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b
KO
K11088
small nuclear ribonucleoprotein D3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110614649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110614649
03041 Spliceosome [BR:
mesc03041
]
110614649
03032 DNA replication proteins [BR:
mesc03032
]
110614649
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
110614649
Spliceosome [BR:
mesc03041
]
Complex A
U1 snRNP components
Sm proteins
110614649
U2 snRNP components
110614649
Complex B
U1 snRNP components
110614649
U4/U6.U5 tri-snRNP components
110614649
Complex C
U2 snRNP components
110614649
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
110614649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6897
Motif
Other DBs
NCBI-GeneID:
110614649
NCBI-ProteinID:
XP_021611946
LinkDB
All DBs
Position
5:complement(23531739..23533844)
Genome browser
AA seq
131 aa
AA seq
DB search
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLGVGRGRSVAMRAKAQAAGRAA
PGRGVVPPVRR
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggagcttagggataccagtgaagctgcttcacgaggcttcgggccacgtggtg
acggtggagttgaaaagcggagagctttacagagggagcatggtggagtgcgaagacaat
tggaattgtcaacttgagagtatcacttacactgctaaggatggaaaggtgtcgcagctt
gagcatgtttttattaggggcagcaaagtcaggtttatggtcataccagatatgctaaag
aatgcacccatgttcaagcgcctggatgctaggatcaagggtaagagcgcatcacttgga
gttggcaggggtagatctgttgcaatgcgggctaaagctcaagctgctgggcgggcagca
cctggtagaggtgttgtaccacctgttaggaggtga
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