Manihot esculenta (cassava): 110614767
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Entry
110614767 CDS
T05761
Name
(RefSeq) serine/arginine-rich-splicing factor SR34
KO
K12890
serine/arginine-rich splicing factor 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110614767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110614767
Spliceosome [BR:
mesc03041
]
Common components
Common spliceosomal components
SR proteins
110614767
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
110614767
NCBI-ProteinID:
XP_021612114
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All DBs
Position
5:5244107..5250066
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AA seq
297 aa
AA seq
DB search
MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAED
AIRGRDGYDFDGHRLRVELAHGGRGHSSSDRHSSYSGGRGRGVSRRSEYRVLVTGLPSSA
SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYEDMKAAIKKLDDSEFRNAFSRAYV
RVREYDSKRDLSRSPSRGRSYSRGRSGSRSRGRSSSRSRSKSPKTKSSRRTPVRSRSRSA
SRSRSGSKPHSLSRSHSRSRSPLPVRQKRTSKSPKKRSVSRSPSGSRSRSRSRSLSR
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgcgcgagcagaactctctatgttggaaatctgcccggtgatattcgcgag
agagaagtggaggatttattttacaagtatggtcccatagcacacattgatctcaagatc
ccaccaagaccccctggttatgcatttgttgagtttgaagaggctcgggatgcagaagat
gcaattcgtggtcgtgatggctatgactttgatgggcatcgattacgagtggagcttgca
catggagggcgtggacattcatcctcagatcgccatagtagttacagtggtggtcgggga
cgaggagtatctaggcgctctgagtatcgtgttttggtcactgggttaccttcgtctgct
tcgtggcaagacctcaaggatcacatgcggcgtgctggtgatgtctgcttctctcaagtg
tttcgtgatggtagcggtaccacagggattgtggattacacaaactatgaagacatgaag
gcagcaatcaagaaacttgatgactccgagtttcgaaatgcattttcccgggcatatgtt
cgtgtgagggagtatgattctaagcgggacttgtctaggagccccagtcgtggccgttct
tattcaagaggccgtagtggtagtcgcagccgtggccgaagttctagccggagcaggagc
aaatcacctaaaaccaagtcgtcaagacgcacgcctgttaggtcaagatcaaggtctgct
tctcggtcccgctctggatcaaagccacattctctgtcaagatcgcattcaagatcaaga
tctccacttccagttcgtcagaaacggactagcaagagtccaaaaaagcggagtgtcagc
cggagcccaagtggtagcagaagcagaagtaggagcaggagcttatcccggtga
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