Manihot esculenta (cassava): 110614811
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Entry
110614811 CDS
T05761
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110614811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110614811
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
110614811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
PINIT
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
110614811
NCBI-ProteinID:
XP_021612167
LinkDB
All DBs
Position
5:complement(1483172..1497346)
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AA seq
742 aa
AA seq
DB search
MDTYSSGEDLVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFSKLEKEAVAKGVPIGQALDIDIPPPRPKRKPHNPYPRKTGVGPPPSHVAVK
DGNPLNCKQTLDLEKEPPPEKSSGDEKHANGKENQDNSRSEVFTVVQEAHCPSVPSANKN
SVPMPEALRKSCSVREFVPSLKEVVNQDASNESYITIELHGNQKLDKPDAKQTVQDNGTN
KGAKLASCPFHEKFVQGKKSNEFNNALPTDEMEAVQNYPRHVPVHVLDGSLGTCTHTPPS
DVSFQDSIFQPIGEVHGHPNLYSYPAASTTTQNQTYPPSLAPTHHNQDDYRSFLHISSAF
SSLIVSTLLQNPAAHAAASFAATFWPYANMASSADSPPCAQGGFPSRQMNSAPSMAAIAA
ATVAAATAWWAAHGLLPLCAPLHAAFTCSPAATAVPSVDAGQVPAARTERKETTLRNPHL
QDQQLDLERSEALQAQNSASKSPNVSLSDSDESGGPKQNTVSKSTDHEMAATAPDIHDPS
KMKNRKQVDRSSCGSNTSSSSEVETDAPKKLEKDKEESKEVDPNHLANESSSRRSRCSSN
TSDSWKEVSEEGRLAFQALFSREILPQSFSPPHDLKGEAHRKDIVEDKQNTDEKDGNASP
VNITSMIRESCTSHHELEKKYSGENGLLTIGLGHGKLKARRTGFKPYKRCSMEAKENRVM
TTGCQYEEKGPKRIRVDGEALI
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggacacatactcctccggagaagacttggttattaagacaagaaaaccttatacaatt
accaagcaacgtgaacgatggacagaggaggagcataataggttcctagaagccttgaag
ctctatggacgagcttggcagcgcatagaagaacatataggaacaaaaactgctgtacag
atcaggagtcatgcacagaaattcttttcaaagttggagaaggaggctgttgctaaaggt
gttccaataggacaagcacttgacatagacattccacctccgcgtcctaagaggaaaccg
cacaatccttatcctcgaaagactggtgtgggtcctccgccttctcatgtggcagtgaag
gatggaaatcctttaaattgtaaacaaactttggacctggagaaagaaccaccgcctgag
aaatccagtggagatgagaagcacgcaaatggaaaagaaaaccaggataacagtcgctca
gaagtctttactgttgtccaagaagctcactgtccctctgtgccttcagcgaacaagaat
tctgtccccatgccagaggcactaagaaaatcatgctcagttagggagtttgtaccttca
ctgaaggaggtggtaaatcaagatgcaagtaatgaatcctatatcactattgaacttcat
ggaaatcagaagctagataagcctgatgccaaacagacggttcaagataatggcactaat
aaaggtgcaaagttggcatcctgcccttttcatgagaaatttgttcagggaaagaagtca
aatgaatttaacaatgcattgccaacagatgaaatggaagctgtgcagaattatccaagg
catgtgcctgtgcatgttttagatgggagcttgggaacgtgcacgcatactcctccctca
gatgtttcattccaggactccatttttcaaccaataggtgaagttcatgggcatcccaat
ttatactcctatccagctgcatctactactactcaaaatcagacttatcctccttcctta
gccccaactcaccataatcaagatgactatagatcatttctccatatatcctccgcattt
tcgagtcttattgtatcaacactgctacaaaacccagcagcccatgctgcagcaagcttt
gcagcaaccttctggccctatgctaacatggcaagttctgcagattctccaccatgtgct
caaggaggttttccatcaaggcaaatgaattcagctcccagtatggcagcgattgctgct
gctacggtggcagcagcaactgcatggtgggcagcccatggattactccccttatgtgcc
cctctccatgctgcctttacctgctctcctgctgcaactgcagttccatcagtggatgcg
ggccaagttcctgcagccaggacagaaaggaaggaaactactctcaggaatcctcatttg
caagatcagcagttggatctagaacgctctgaagctttgcaagctcaaaattcagcatct
aaatcaccaaatgtgtctttgtctgattctgacgagagtggaggtccaaagcaaaatacc
gtgtcaaaatctactgaccatgagatggctgccacagcacctgatatccatgatccgagc
aaaatgaaaaacagaaaacaggttgaccgttcttcatgtggttcaaacacatcttctagt
agtgaagtagagacagatgcacctaagaagcttgaaaaagacaaggaagagtcaaaagaa
gttgatcctaaccatctggctaatgagtctagtagtcgtcgcagtagatgcagtagcaac
acgagtgattcatggaaggaggtatctgaagaggggcgactggcttttcaagctctcttc
tccagggagatattgccacaaagcttctctccaccacatgatctgaagggtgaggcacac
cggaaagatatcgttgaagataagcagaatacagatgagaaggacggaaacgcatcacct
gtgaatatcaccagcatgatacgtgaatcctgtaccagccatcatgaactggagaaaaaa
tacagcggggagaacgggctgctgactatcgggcttggacatgggaagctaaaggctcgt
cgaacaggatttaaaccctacaaaagatgttcaatggaggccaaggaaaacagggtgatg
accaccggctgccaatacgaggagaaaggccccaagaggatacgtgttgatggggaagct
ttaatttaa
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