Manihot esculenta (cassava): 110614829
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Entry
110614829 CDS
T05761
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03008
Ribosome biogenesis in eukaryotes
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110614829
09123 Folding, sorting and degradation
03018 RNA degradation
110614829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110614829
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110614829
03009 Ribosome biogenesis [BR:
mesc03009
]
110614829
03016 Transfer RNA biogenesis [BR:
mesc03016
]
110614829
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110614829
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110614829
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
RNases
110614829
Transfer RNA biogenesis [BR:
mesc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110614829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
110614829
NCBI-ProteinID:
XP_021612197
LinkDB
All DBs
Position
5:complement(25205069..25215193)
Genome browser
AA seq
1133 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEEPVVIDGVKIPVDTSRPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFEREGRKLPPKEGSQVFDSNVITPGTEFMAVLSIALQYYIHL
RLNYDPGWKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGYNPNTRHCLYGLDADLIMLA
LATHEVHFSILREIVFTPGQQDKCFLCGQMGHLAADCEGKAKRKAGEFDEKGDENVVVKK
PYQFLNIWTLREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLIAVYKKELRTMDGYLTNASKPNLSRVEHFIQAVGSYEDKIFMKRARLHQRQSERIK
REKAQARRGDDVAPQVQPESLVPVARFRGSRLASAPSPSPFQQSLGRTADVQARKVARLS
SSANVGAAIVEAENSLEIEICENENKEELKAKLKEILREKNDIFNSKNQEEDKIKLGEPG
WKERYYEEKFYAKTPEEIENIRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFAS
DLKDLDQMKIEFELGSPFKPFDQLMGVFPAASAHALPVHYRKLMTDPNSPIIDFYPTDFE
VDMNGKRYAWQGIAKLPFIDEARLLAEVKKIEHTLTEEEARRNSMMFDMLFVLSSHSLAE
SIYLLDNHCKQFTDKERVEVQERINPELRAACSDGMNGYISPCSGDTQPPIFRSPVAGME
DILDNEVICAIYRLPDLHKHITRPPAGVIFPKKIVNAGDLKPAPVLWHEDSGRRPWESER
HNPPGTISGRHLGEASHRLVVNSLQVKVDRNGYAHHLHAPPPSYAAAPHVPPHYSHSNGF
HDPGRHGIVHPRRDYSHAGQHRFSNPHYNRGYGQPYASSGGNHHYDGSNPQYERDNRSGG
PHSRQVHNTPEFHQNGGPRHLHGSITQTSPGVTAYGYQGAYDNYQRHQSLGVGGQQWGDG
FPPLADQNVPRGYNHHQQRGNRYSALDARGSRVPPSGAVGPSRVPPSGAGGPSRTPPHHL
PHGGQSRRPMQPPPGGAGGFHQPAPPSNGNRGPRPPPLGGANKRPSPAGYGHR
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcgttctatcggtggttagctgaaaagtatccgttggtggtggtggat
gtaatcgaggaagagccagtggttatcgatggagttaagattccggtggatacgagtaga
cctaaccctaacaacatcgaatacgataatttgtatctcgacatgaacgggattattcac
ccttgcttccaccctgaagacagaccttccccaacctctttcgacgaggtattccagtgc
atgtttgactacattgatagattgtttgtgatggtgagacctcgaaagttgttatatatg
gcaattgatggcgttgctcctcgggctaaaatgaatcagcaacgatctaggcgatttaga
gcagctaaagatgcagcggatgcggcagctgaagaagagaggctaagggaggagtttgag
agggagggcagaaagctaccccctaaagagggctcacaggtttttgattccaatgttatc
actccaggaactgaatttatggctgttctgtcaattgcactgcagtactacattcatctt
agactaaattatgatcctggctggaaaaaaattaaggttatcctttctgatgcaaatgtt
cctggtgaaggggaacacaagattatgtcatatattcgtcttcagaggaatcttcctggt
tataatccaaatactcgccattgcctgtatggtttggacgcagatctgattatgttggct
ttggctacccatgaagttcatttttcaattcttagagagattgttttcactcctggccaa
caagacaagtgcttcctatgtggtcaaatgggtcatttagcagcagattgtgaaggaaag
gcaaagaggaaggcaggggaatttgatgagaaaggtgatgagaatgttgtggtaaaaaag
ccctaccagtttctcaatatttggactcttagagagtatctggaatatgaaatgagaatt
cctaatcctccgtttgagattgattttgaatgcattgtggatgattttatattcatgtgc
ttcttcgttggcaatgactttttgccacatatgcccacattggagattcgtgagggtgca
atcaacttgcttatagcagtatacaagaaggaacttaggacaatggatgggtatctgaca
aatgctagcaagcctaatttgagcagggtggagcattttattcaagcagtgggatcatat
gaagacaaaatattcatgaaaagagcgcgcttgcaccagaggcaatcagaaagaatcaag
cgggaaaaggcacaggcaagaaggggagatgatgttgcacctcaagttcaacctgagtcc
ttggttccagttgctcgatttcgtggttctcgtcttgcttctgctccttcaccttcgcca
tttcagcagagtttaggacgcactgcagatgttcaggcccgtaaagttgcccgtttgtct
tcatcagccaatgttggtgctgctattgttgaagcagagaatagtctggaaatagaaata
tgtgaaaatgaaaataaagaagaattaaaagctaagcttaaggagatacttcgcgagaag
aatgacatcttcaactcaaaaaatcaagaagaagacaagataaaattgggagaaccagga
tggaaggaaaggtattatgaagagaagttttatgcaaaaactcctgaggaaattgagaac
atacgaaaggatgttgttttgaggtacactgaagggctatgttgggtcatgcattattac
tatgaaggagtttgttcttggcagtggttttatccttatcattatgcaccctttgcttct
gacctcaaagatctagatcagatgaagattgagtttgaactgggctccccattcaaacca
tttgatcagcttatgggagttttccctgctgcgagtgcccatgctcttcctgtgcattat
agaaaattgatgactgatccaaattctcctattattgatttttaccctactgattttgaa
gtggacatgaatggaaagcggtatgcatggcagggtattgcaaagttgcccttcattgat
gaagctcgccttcttgcggaggtcaaaaagattgaacacacgctaacggaggaggaagca
aggagaaacagtatgatgtttgacatgctttttgtgttatcatctcattctcttgctgag
agtatatatttacttgataatcactgtaaacaatttacggacaaagaacgagttgaagtc
caagaacgtattaatcctgagttgagggctgcgtgcagtgatgggatgaatggctatata
tccccttgttctggagatactcaacctcctatattcaggtctccggttgcagggatggag
gacattttggacaatgaagtcatatgtgctatatacaggcttcctgacctacataaacat
ataacacgaccacctgctggtgtcatattccctaagaagattgtaaatgcaggggatctg
aaacctgcacctgttttgtggcatgaagattctggcaggaggccttgggaaagtgaaagg
cataacccccctggaactatctctggccgccaccttggggaagcatcacatcgacttgtc
gttaatagtttacaagtaaaggtggatcgcaatggttatgcccatcatttgcatgccccc
ccaccgtcttatgctgcggctcctcatgtcccaccacattattcccattcaaatggattt
catgatccaggaagacatggcattgtgcatccgagaagggattattctcatgctggtcaa
cataggttttcaaaccctcactataaccgtggttatggtcagccctatgcttcatcaggt
ggcaaccaccattatgatgggtctaatcctcaatatgaaagagataaccgatcaggggga
ccgcattcaaggcaggtacataacacaccagaatttcatcagaatggtggaccacgacac
ctgcatgggtccattacacaaacatcacctggggtcactgcctatggttatcaaggtgct
tatgataactatcagaggcatcaatcgcttggagttggtggtcagcagtggggtgatggt
ttccctccactggctgatcagaatgttcccagaggttataatcaccaccaacaaaggggt
aacagatattctgcgttagatgcgagaggaagtagggtgcctccgtctggtgctgttggg
ccaagtagggtgcctccgtctggtgctggtgggcctagtaggacgccaccacaccatttg
cctcatggtgggcaaagtagacggccaatgcagccaccacctggtggagctggtgggttt
caccaaccagcaccacctagtaatggaaatagggggcctaggcctccaccacttggtgga
gctaataagaggccatccccagctgggtatgggcaccgatag
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