KEGG   Manihot esculenta (cassava): 110615018
Entry
110615018         CDS       T05761                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03018  RNA degradation
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110615018
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110615018
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110615018
   03041 Spliceosome [BR:mesc03041]
    110615018
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110615018
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110615018
Spliceosome [BR:mesc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110615018
 Complex C
  U2 snRNP components
    110615018
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 110615018
NCBI-ProteinID: XP_021612413
LinkDB
Position
5:6023512..6025594
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDIDLLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgcttttcttttcgtatttcaaggacttggtgggcagggaagtgacagtggagctcaag
aacgatttggcaatcagaggaacgcttcactctgtcgatcagtacctcaatattaagctc
gaaaacactcgggttgtcgatcaagacaagtacccccacatgctctcagtcagaaactgt
ttcattagaggatctgttgttagatatgttcaattgcctccggagggtgttgacatagat
ttgctccatgatgcaacaagaagagaagctcggggtgggtga

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