Manihot esculenta (cassava): 110615018
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Entry
110615018 CDS
T05761
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110615018
09123 Folding, sorting and degradation
03018 RNA degradation
110615018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110615018
03041 Spliceosome [BR:
mesc03041
]
110615018
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110615018
mRNA degradation factors
5'-3' decay
Lsm complex
110615018
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110615018
Complex C
U2 snRNP components
110615018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
110615018
NCBI-ProteinID:
XP_021612413
LinkDB
All DBs
Position
5:6023512..6025594
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDIDLLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcttttcgtatttcaaggacttggtgggcagggaagtgacagtggagctcaag
aacgatttggcaatcagaggaacgcttcactctgtcgatcagtacctcaatattaagctc
gaaaacactcgggttgtcgatcaagacaagtacccccacatgctctcagtcagaaactgt
ttcattagaggatctgttgttagatatgttcaattgcctccggagggtgttgacatagat
ttgctccatgatgcaacaagaagagaagctcggggtgggtga
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