Manihot esculenta (cassava): 110615040
Help
Entry
110615040 CDS
T05761
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00040
Pentose and glucuronate interconversions
mesc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
110615040
Enzymes [BR:
mesc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
110615040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
110615040
NCBI-ProteinID:
XP_021612440
LinkDB
All DBs
Position
5:complement(31039751..31042274)
Genome browser
AA seq
379 aa
AA seq
DB search
MAKLWNFALALSLVIFFFIAPSFCVVQKMNPIDSCWRRNPNWRRSRQQLATCSVGFSGKM
TNNIGKDTIRYKVSDPSDDPLNPKKGTLRYGATMITGKVWITFQKNMNIQLVKPLLISSF
TTLDGRGVDIHITGNACLLVYKATDVIIHGLRIHHCKAVGPSSVRGPNGEMVPLGQMDGD
AIRLVTASKVWIDHNTLYSCQDGLLDVTRGSTDVTISNNWFKDQDKVMLLGHDDGYLRDK
NMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNLYQGWEQYAIGGSMNPSIKSEANYFIAP
KSGNKEVTWRNGINGNSKPWKFYSVGDVFENGASFIQTGSGGAKPNYNDQQKFKVADAKF
VRSITKSSGALKCFRTIMC
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaactatggaacttcgctttggctctttctttggtcatcttcttcttcatcgct
ccgagtttttgtgtcgtccaaaagatgaatcccattgatagttgctggagacggaaccct
aattggcgaagaagcaggcagcaactggccacttgctccgtggggttttcagggaagatg
actaacaatattgggaaagatactatccgctacaaagtgagtgatcctagtgatgatcca
ttgaatcctaagaaagggactctgcgatatggagccaccatgatcactgggaaagtgtgg
ataactttccaaaagaacatgaatattcagcttgtcaagcccctcctcattagcagtttc
accacactcgacggccgtggtgtcgacattcacatcactggcaacgcttgccttctggtc
tacaaggcaacagatgtgatcatccatgggctaaggattcaccattgcaaggccgtaggt
ccatcatcggtaaggggaccaaatggagaaatggtgcctctaggtcagatggatggagat
gcaatcagattggttactgcatcaaaggtttggatagaccacaatacactgtattcatgc
caggatggtcttctggacgtaactcgaggatctacagacgttaccatctctaacaactgg
ttcaaggaccaagacaaggttatgcttcttggacacgacgatggatacttgagagacaag
aacatgagagttactgttgtgttcaatcactttggtccaaattgcaaccaacgaatgcca
agggttcgccatggatatgcacacgtggccaacaacctgtaccaaggatgggaacagtat
gcaattgggggaagcatgaatcctagcattaagagtgaagccaactacttcattgcacca
aaatcaggaaataaagaggtaacatggagaaatggcatcaatgggaatagcaagccatgg
aagttctattccgtgggagatgtatttgaaaatggagcctctttcattcagactggttca
ggtggggcaaagcctaattataatgatcaacaaaagtttaaggttgcagatgccaagttt
gtgaggtcgataacaaagtcatcaggtgctttaaagtgttttagaactattatgtgctga
DBGET
integrated database retrieval system
