Manihot esculenta (cassava): 110615267
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Entry
110615267 CDS
T05761
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110615267
Membrane trafficking [BR:
mesc04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
110615267
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Beta-prop_THOC3
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_EML_2
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_VPS8
Beta-prop_WDR3_1st
Beta-prop_HPS5
Beta-prop_RSE1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
110615267
NCBI-ProteinID:
XP_021612755
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Position
1:complement(41179795..41191121)
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AA seq
1123 aa
AA seq
DB search
MYMAYGWPQIIPLDSGLCPSSQKIVYLKVINRLLLVVSPSHFELWSSSQHKVRLGKYKRD
VESVEREGENLQAVWSPDAKLIAIITSSFFLHIFKVQFVEKRIQIGGKHPSGLFLANISL
LLSEQVPFAEKNLTVSNIVSDCKHMLLGLSNGSLYSISWKGEFNGAFELNPCRHESSEVS
MFPQSLDNGLGSGGAPGVLVTNHYEMKKHAIMQLEFCLPMRLLFVLYSEGQLVLCSMSKK
GLKQAESIRAEKKLGSGDAVCASVAPDQQILAVGTRSGVVELYDLAESASLIRTVSLYDW
GYSVEDTGSVSCIVWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQVGLSSVSSPKVKP
NQDCKYEPLVGGTSLMQWDEYGYKLYAIEEGSLERILAFSFGKCCLSRGVSGMTYVRQVI
YGEDRLLVVQSEDTDELKILHLNLPVSYLSQNWPVQHVAASKDGMYLAVAGLHGLILYDM
RLKKWRVFGDITQEQKIQCEGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK
PLLAKPMVMDVYQDHILVTYRPFDVHIFHVKLFGELTPHSTPDLQLSTVRELSIMTAKSH
PAAMRFIPDQIPRESALKNHISPSSDLLMREPARCLILRTNGELSLLDLDDGRERELTDS
VELFWVTCGQSDEKTNLIEEVSWLDYGHRGMQVWYPSPGVDPFKQEDFLQLDPELEFDRE
VYPLGLLPNAGVVVGVSQRLSFSTCTEFPCFEPSPQAQTILHCLLRHLLQRDKIEEALRL
AQLSAQKPHFSHCLEWLLFTVFDAEISRQNANKNQKSVPKSAGNFSLLDKTCDLIRNFPE
YLDVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQ
YCALRLLQATLDESLYELAGELVRFLLRSGKEYEQTSTDSDRLSPRFLGYFLFRSSHRKT
SLDKSTSFKEQSAHVASVKNILENHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYGS
ARLENFASGLELIGQKLQMGTLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRSEVLFDL
FQHDMRLWKAYSITLQSHPAFVEYQDLLETLEERLTSDLNLEK
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggatggcctcagattatcccgctggattcaggactctgcccttct
tcacagaagattgtctatctgaaagtcatcaatcgtctcttgctcgtcgtctccccttct
cactttgagctctggagctcctctcagcataaagtgaggttgggcaagtacaagagagat
gtggagtctgtggagagagaaggcgaaaatttacaggctgtgtggagtcctgacgccaaa
ttgatcgccattattacgtcgtccttctttcttcacatattcaaggttcaattcgttgag
aaaagaatacagattggagggaagcatccatctggtttgtttcttgctaatatatctctt
cttctcagtgagcaagtacctttcgctgaaaagaacttgacagtgagcaatattgtgagt
gattgcaaacatatgcttctgggactttctaatgggtccttatacagtatctcttggaag
ggagagtttaatggggcttttgaacttaatccctgtcgacatgagagcagtgaagtctct
atgttcccacagtctttagataatggactaggttctggaggggccccaggggtccttgtg
actaatcattatgaaatgaagaagcatgccattatgcagctggagttttgcttgccaatg
aggctgctatttgttttatactctgaaggccaactagtgttatgctctatgagcaaaaaa
ggtttaaagcaagctgagtctatcagagctgaaaagaagttgggctctggtgatgctgtt
tgtgcttcagtagctccagatcaacaaatcctggcagttggtactagaagtggagttgtt
gagttatatgacctagcagaatctgcatcactcatccgtactgtgtctttatatgactgg
ggatattcagtggaggacactggttctgtcagttgtattgtgtggacaccggataattct
gcttttgctgttgggtggaagttaagaggacttacagtttggtctgtttctggctgtcgt
ttgatgtcaacaatccgtcaagttggtttaagttctgtttcttctccaaaggttaagcca
aaccaagattgtaaatatgagccattggttggtggcacctcactgatgcagtgggatgaa
tatggatataagctttatgcaattgaagaagggtctttggagagaattctagcattttct
tttgggaaatgctgtcttagcagaggagtatctggcatgacttatgtccgtcaggtgatt
tatggcgaagatcggttgcttgttgtacagtctgaagatactgatgaacttaaaatttta
catctaaatcttccagtttcttacctctcccaaaattggccagttcaacatgttgcagcc
agcaaggatgggatgtacttagcagttgctggtcttcatgggttgatcttatatgatatg
cggttgaagaagtggcgagtgtttggagatattactcaggaacaaaagattcagtgcgaa
ggtttgctgtggctggggaagattgtggttgtctgcaactacattgattcttccaacacc
tatgaactacttttttatccaagataccatcttgatcagagttccttgctttgtcggaag
ccattacttgccaagccaatggtgatggatgtctatcaagaccatattctcgttacttat
cgcccatttgatgtccacatattccatgtgaaattatttggtgaactgacacctcatagc
actccagacttgcagctttctacagtacgggaactctcaatcatgactgcgaagagtcat
cctgctgcaatgcgttttatccctgatcagattccaagagaaagtgccttaaagaatcat
atttcaccatcttcagatttattaatgagagagcctgcaagatgtttgatactgaggaca
aatggggagctttcacttttggatttggatgatggacgtgaaagagagctcactgactct
gttgaattgttttgggttacctgtggtcaatctgatgagaagactaatctaatcgaggaa
gtttcttggttggattatggccaccgagggatgcaggtttggtatccatctccaggtgtt
gatccttttaagcaggaggattttttgcagttggacccagagctggaatttgatcgtgaa
gtgtatcctctggggcttcttccgaatgctggtgttgttgttggtgtctcccagagactg
tcattttcaacatgcactgagtttccgtgctttgagccatctcctcaagctcaaactata
ttgcattgcctgctcaggcaccttcttcagagggacaaaattgaggaggctttaaggttg
gcacagttatcagcacagaagcctcatttttctcattgtctggaatggcttctttttact
gtatttgatgcagaaatttccaggcagaatgcaaacaagaaccaaaaatcagtccctaaa
tctgctggcaacttctctcttttggataagacctgtgatttgatcagaaatttcccagag
tatcttgatgtagttgtgagtgttgcacgaaaaactgatggtcgacactgggcagattta
ttctcagctgctggaagatcaacagagttgtttgaggaatgcttccaacgaagatggtac
cgaactgcagcatgctatatactggttattgctaaacttgaaggtcctgctgtcagtcaa
tattgtgctctacgtttactacaggcaacactggatgaatctctgtatgaacttgctggg
gagctggtgcgtttcttgttgagatctggaaaagagtatgagcagacgtcaacagattct
gacagactgtctcctagatttttgggttattttctcttccgttctagtcacaggaagaca
tccttggataagagcacgtcattcaaagagcaaagtgctcatgttgcttctgtgaagaac
attttagaaaaccatgccagctatttgatgtcagggaaagaactttccaagcttgttgca
tttgtaaaaggcactcaatttgatttagtggaatatcttcaacgagaaagatacggttct
gcacgcttggagaattttgcatctgggctggaactaattgggcagaagctccaaatgggt
acactgcagagtcggttggatgctgagtttcttttggctcatatgtgttctgtcaagttc
aaggaatggatagttgtcctagccactctcttaagacgatctgaggttcttttcgatctt
ttccagcatgacatgcggttgtggaaggcctatagcattacccttcagtcacaccctgca
tttgttgaataccaagatctacttgaaaccttggaggagaggctgacatctgatttgaat
ttggagaagtaa
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