Manihot esculenta (cassava): 110615280
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Entry
110615280 CDS
T05761
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
mesc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110615280
03083 Polycomb repressive complex
110615280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110615280
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
110615280
Histone modification proteins
HAT complexes
HATB complex
110615280
HDAC complexes
Sin3A-HDAC complex
110615280
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
110615280
PRC2.2
110615280
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
110615280
Heterochromatin formation proteins
Other heterochromatin formation proteins
110615280
Chromatin remodeling factors
NuRD complex
110615280
NuRF complex
110615280
NuRF complex (fruit fly)
110615280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_RFWD3
Beta-prop_EML
Beta-prop_WDR75_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD_LRWD1
Beta-prop_RIG_1st
eIF2A
Beta-prop_HPS5
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
110615280
NCBI-ProteinID:
XP_021612773
LinkDB
All DBs
Position
5:complement(5097011..5100795)
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSDFGGFGAATGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACTPDLRLRGHSTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHMRHE
YLFGSVGDDQCLLIWDLRTPTVTKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDIRKISTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDIPGDES
TKGS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagacgaagaagagatgaggggagagatagaggagaggctgataaacgaagag
tacaaaatatggaaaaagaacactccattcctttacgatctggtcatcacccatgccctt
gagtggccttcccttacggtcgagtggttacccgaccgtgaggagcctcctggcaaggac
tactccgtccagaagatgattcttggtactcatacctccgagaacgagcctaactacctc
atgcttgcccaggttcagcttccccttgaagatgccgaaaacgatgcgcgccactacgac
gacgatcgctctgattttggcggctttggagctgccactggcaaggtgcaaataattcag
caaatcaatcacgatggagaagttaacagggctcgttatatgcctcaaaacccttttatt
attgccactaagactgttagtgctgaagtatatgtctttgactatagcaagcatccatcc
aagcctcctcttgacggtgcttgtactcccgatttgagattgagaggccacagcactgaa
ggttatggtttgtcttggagtaagtttaaacaaggtcacttgcttagcggttctgatgat
gctcaaatttgcttgtgggacatcaatgccactcctaagaacaaggcccttgaggctatg
caaatatttaaggttcatgaaggcgtcgtagaagatgttgcatggcatatgaggcatgaa
tacttatttggctctgttggggatgatcaatgccttcttatatgggatctgcggacgcca
acagtcaccaagcctgtccaatcagttgttgctcaccagagtgaggttaactgcttagct
tttaatcctttcaatgaatgggttgttgcaacgggctccactgataaaactgtaaagtta
tttgatatacgtaaaatcagcacagcacttcatacatttgactgtcacaaggaggaggtt
ttccaagttgggtggaatcccaagaatgaaaccatcttagcttcttgttgccttggtaga
aggctcatggtgtgggatcttagcaggattgatgaagaacaaacaccagaggatgctgaa
gatggccccccagagttgctgtttattcatggtggtcacacaagtaaaatatcagatttt
tcttggaatccatgtgaagactgggttgttgccagtgtggctgaagataacatcctacag
atatggcaaatggcagagaatatctaccatgatgaagatgacatacccggggatgaatcc
accaaaggatcctag
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