Manihot esculenta (cassava): 110615738
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Entry
110615738 CDS
T05761
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110615738
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110615738
Spliceosome [BR:
mesc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110615738
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Ortholog
Paralog
GFIT
Motif
Pfam:
SH3_ISE2
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
IstB_IS21
Ski2_cyano_M
nSTAND_NTPase5
Lzipper-MIP1
Hydrophobin_like
Don_juan
Motif
Other DBs
NCBI-GeneID:
110615738
NCBI-ProteinID:
XP_021613490
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All DBs
Position
5:8551616..8558467
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AA seq
1178 aa
AA seq
DB search
MNTLSSILRPPPISHPFTFKPPSFPQLHPLSKTLGFCCPKTILFLPLYSTPFRSSFKSQN
SQFPVESQLSDVDEEEEEEEDDDDDDEEEAADEYDDISGEISDGIEQSEDETEMSMDARE
EVLAWRKETKSQRVEKIRNEVKEFGNDIIDVDELASIYDFRIDRFQRLAIKAFLNGSSVV
VSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFRDFRETFGEDNVGLLTGDS
AVNKDAQVLIMTTEILRNMLYQSIGMVSSGSGLFQVDVIVLDEVHFLSDISRGTVWEEIV
IYCPKEVQLICLSATVKNPDELAGWINEVHGKTELVTSSKRPVPLTWHFSTKTSLFPLLD
EKGKNMNRKLSLNYLQLSASGVKSFRDDGHRRRKSRKHGNDREINDIDSTSGEPLSKNNI
GRIRRSLVPQVIDTLTQLKVKDMLPAIWFIFNRRGCDAAVQYIEGCKLLDECEMSEVELA
LKRFSIQNPDAVRETSVKGLLNGVASHHAGCLPVWKSFTEELFQRGLIKVVFATETLAAG
INMPARTAVISSISKRSGNGRIQLSPNELLQMAGRAGRRGIDKRGHVVLVQTPNEGAEEC
CKLLFAGLEPLVSQFTASYGMVLNLLAGTKVTHISNESDNMKVLQAGRTLEEAKLLVEKS
FGTYIGSNVMLASKEELAKIHKEIEKLTSEITDDAVDRKSRQTLSDAAYKEIADLQEQLR
EEKRLRTELRRIMERKRLSTLKLLLEELGNDHLPFLCLQYKDSEGVEHLVPAVYLGKVDI
LDGLKLKNMVSVSDSFEINAVIAETSSGDAKSLADIEPSYYVALGSDNSWYLFTEKWVKT
IYRTGFPNTALAQGDALPREVMWTLLDKEEKQWEKLADSELGGLWYMEGSLETWSWSLNV
PVLNSLSENDEVLHMSQAYHDAVEHYKSQRTKVARLKKRIARTEGFREYKKILDWKSFTE
DKIKRLKVRSNRLINRIEEIEPSGWKEFLKISNVVREIRALDINTQVIFPLGETAAAIRG
ENELWLAMVLRNRILVDLKPAQLAAVCASVVSEGIKVRPWENNSYIYEPSSAVINVISVL
DEQRSSLLQLQEKHDVDVSCCLDSQFCGMVEAWASGLTWREMMMDCAMDDGDLARLIRRT
IDLLAQIPKLPDIDPVLQGNAXTASDILDRPPISELAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgctatcgtccatcctccgacctcctcccatttctcatcccttcaccttcaag
cccccctcatttccccaactccacccgctctcgaaaaccctcggattctgctgccccaag
acaatcctctttttacctctatattcaactccatttcggtcctccttcaagtcccagaac
tcccaatttcccgtggaatctcagctctctgatgtcgacgaagaagaggaggaagaagaa
gacgacgacgacgacgacgaagaagaagctgctgatgaatatgacgacatttccggtgag
atttcagacggaatcgaacaaagcgaagatgaaacggaaatgtcgatggatgcgagagaa
gaagtgttagcttggcgcaaggaaaccaagtcgcagagagttgagaagatccgtaacgaa
gtcaaagagtttggaaatgacataatagatgttgatgaacttgcctccatttacgatttc
cgtattgatagattccagcgattggcgataaaagcgttcttgaatggctcttccgtagtg
gtttcggcgccaacaagcagtggaaagacgttaatagctgaagctgcagcagttgccact
gtagctcggggaaggagaatattctataccactccgcttaaagcattatcgaatcaaaag
tttcgtgattttcgggagacatttggggaggacaatgttggtcttctcactggagattct
gccgtcaataaagacgcccaagttttaataatgactactgagattttgcgcaacatgtta
tatcagagcattggaatggtttcttctgggagtgggcttttccaggtggacgtgattgtt
ttggatgaagttcattttctaagtgacatatctcgcggtacagtgtgggaggaaatagtc
atttattgcccaaaagaggtgcaactaatatgtctgtcagcaacagtaaagaatccagat
gagttggctggctggattaatgaggttcatggtaaaactgaattggtgacatcatcaaaa
cgtcctgttccattgacttggcacttctccaccaagacttctttgtttcctcttcttgac
gagaaaggaaagaatatgaataggaagctgtcacttaattatttacaactttctgcttca
ggagttaaatctttcagggatgatgggcatagaaggaggaagtcaagaaaacatgggaat
gacagagaaataaatgacattgatagcacgtctggagaacctctctcaaagaataatata
ggcagaatccgccgttcactggtgcctcaagtaattgatacattaacacagcttaaggta
aaggatatgctgccagcaatttggtttatatttaataggagaggatgtgatgcagctgtt
cagtacattgaaggttgcaagctcttagatgagtgtgagatgagtgaggttgaactggct
ttgaagaggttcagcattcagaatcctgatgctgtcagggagacttctgtcaaaggactt
ctgaatggggttgcttcacatcatgctggctgcctccctgtctggaaatcatttactgag
gaactgtttcaacgaggacttatcaaagtcgtgtttgccactgaaacacttgctgctggg
atcaacatgcctgctagaacagctgttatatcatctatcagcaaaagaagtggtaatgga
cgtatccagttaagcccaaatgaactgcttcaaatggctgggcgagctggacgtagaggt
attgataaaaggggccatgttgtgctggttcagactcctaatgaaggtgctgaagagtgc
tgcaagcttctgttcgctgggctagaacctcttgtatcacagtttacagcctcttatggt
atggtgctgaatcttcttgctggtacaaaagtcactcatatatcaaatgaatcagataat
atgaaagttcttcaggcagggagaactttggaagaagcaaagctattagttgagaaaagt
tttgggacctatattggtagcaatgtaatgcttgcatcaaaagaagagcttgctaaaata
cacaaagagattgaaaaactaacttcagagatcactgatgatgctgtagatagaaaaagc
aggcaaaccctatctgatgcggcatataaagagattgcagatctgcaagaacaattgaga
gaagaaaaacgccttcgaacagaactacgtagaattatggaaaggaagagactgagtacc
cttaaacttttattggaggagttgggaaatgatcatttaccctttttgtgcttgcaatac
aaagattctgagggagttgaacatttagtccctgctgtttatttggggaaggtcgatata
ttagatggtttaaaacttaaaaacatggtttctgttagtgattcatttgaaataaatgct
gtaatagctgagacaagttctggtgatgccaaaagtcttgcggatattgaaccatcttat
tatgttgctcttggttctgataactcttggtacctttttacagaaaaatgggttaaaact
atttataggaccggctttcctaacactgctttggctcaaggggatgctttacctcgtgaa
gttatgtggacgctactcgataaggaagagaagcaatgggaaaaacttgctgattcggaa
cttggtggcttatggtacatggaaggttctttagagacatggtcatggagtttgaatgtg
ccagttttaaatagtctttctgaaaacgatgaggttttacacatgtcgcaagcctatcat
gatgctgtagaacattacaagagccaaagaaccaaggttgcacgtttgaagaaaaggatt
gcccgtacggaaggttttagagaatataaaaagatcttggattggaagagttttactgag
gataagatcaaacgcctgaaggttagatcaaaccgtctgatcaatcgaatagaggaaatt
gaaccatctggttggaaggaattcttgaagatcagcaatgtagtacgtgaaattagggca
ttggacatcaatacacaggtaatatttcctcttggtgagactgcagccgccattcgagga
gaaaatgaactctggcttgccatggtccttcgaaacagaatcttggtggatttaaaacca
gcccaacttgctgctgtttgtgcgagtgtagtttctgagggaatcaaagttcgtccatgg
gaaaacaatagctacatatatgaaccttctagtgcagtgattaatgttattagcgtcttg
gatgagcaaagaagctcactgttgcaacttcaggaaaaacatgatgtggacgtatcctgt
tgcttggatagccaattttgtggtatggttgaagcgtgggcttcaggtcttacttggaga
gaaatgatgatggattgcgcaatggatgatggggatctagctcgactaataagacggaca
atagatctactggcgcagattcctaaattgcctgatattgatcctgtgttacaaggcaat
gcanagactgcatctgatatcttggaccggccaccgataagtgaattggctggatga
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