KEGG   Manihot esculenta (cassava): 110615800
Entry
110615800         CDS       T05761                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03013  Nucleocytoplasmic transport
mesc04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110615800
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    110615800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110615800
   04131 Membrane trafficking [BR:mesc04131]
    110615800
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     110615800
Membrane trafficking [BR:mesc04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    110615800
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    110615800
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    110615800
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_Vps41 Beta-prop_RIG_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st EIF3I Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd WD40_RFWD3 Beta-prop_WDR41 Beta-prop_NOL10_N Beta-prop_SCAP
Other DBs
NCBI-GeneID: 110615800
NCBI-ProteinID: XP_021613603
LinkDB
Position
5:6580822..6584690
AA seq 301 aa
MPSQKIETGHQDTVHDVVMDYYGKRIATASSDHTIKIIGVSNNTSQHLAQLTGHQGPVWQ
VAWAHPKFGSLLASCSYDGRIIIWKEGNQNEWTQAHVFDDHKSSVNSIAWAPHEVGLCLA
CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSALLDPVQKLCS
GGCDNTVKVWKLYNGTWKMDCFPALHMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW
IVGKEGDQWEGKVLHDFKTPVWRVSWSLTGNILAVADGNNNVTLWKEAVDGEWQQVTTVD
S
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccttctcaaaagattgagacaggtcatcaggacacagtccatgatgtggttatggat
tattatggtaagcgcattgctactgcctcatcggaccacacaattaagataattggtgtt
agcaacaatacttcacagcatcttgctcagctcacgggccatcaaggacctgtttggcaa
gtagcctgggcgcacccaaagtttgggtccttgcttgcttcatgttcttatgatgggcga
atcataatatggaaggagggcaatcaaaatgagtggactcaagctcatgtttttgatgac
cacaaatcatctgttaactccattgcttgggcacctcatgaggttggtctttgtttggca
tgtggctcttcagatggaaatatatcagtttttactgcaagagcagatggtggttgggac
acatccagaattgatcaggctcacccagttggagtaacttcagtttcttgggccccatca
actgcacctggtgctcttgttggctctgctttgcttgatcctgttcagaagctttgctca
ggtggttgcgacaatactgtgaaagtgtggaagctttacaatggaacttggaagatggac
tgctttcctgcccttcacatgcatactgattgggtaagggatgtggcatgggcacctaac
ttgggccttccaaaatcaactattgccagtgcttctcaggatgggaaagttattatatgg
attgtgggaaaggaaggggatcaatgggagggtaaggtcttgcatgatttcaagactcct
gtttggagagtctcatggtcgctcactggaaatattttagctgttgctgatgggaataac
aatgtgacattgtggaaagaagctgtagatggagaatggcaacaggttactacggttgat
tcctag

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