Manihot esculenta (cassava): 110615830
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Entry
110615830 CDS
T05761
Name
(RefSeq) spastin isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110615830
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
mesc04812
]
110615830
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
110615830
Membrane trafficking [BR:
mesc04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
110615830
Cytoskeleton proteins [BR:
mesc04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
110615830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
Vps4_C
NPHP3_N
AAA_22
AAA_16
AAA_14
TIP49
Mg_chelatase
AAA_2
DUF815
RNA_helicase
MIT
AAA_25
IstB_IS21
DUF4368
nSTAND3
Guanylate_kin
AAA_24
AAA_33
Motif
Other DBs
NCBI-GeneID:
110615830
NCBI-ProteinID:
XP_021613675
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Position
5:3533798..3546964
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AA seq
489 aa
AA seq
DB search
MSFLKGIIDSLGSAFSSYSSASPVQEENPSAGTMEGVPGTSITNERAAYKLKGYFDLAKE
EIAKAVRAEEWGLVDDAVFHYKNAQRILVEATSTPVPSYISFSEQEKVKSYRQKISKWQG
QVSDRLQALNRRAAGTSSNKTILTHTHGAAVSSSTSNFKQDLSQKSPRSTRNNVVIRNQT
DKPASSKPILDSGSSYDAKLVEMINTAIVDRSPSVKWDDVAGLEKAKQSLMEMVILPTKR
RDLFTGIRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVR
TLFMVAISRQPSVIFMDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNTNDLVIVIG
ATNKPQELDDAVLRRLVKRIYVPLPEKNVRRLLLKHKLKGQAFSLPDGDLERLVGDTEGY
SGSDLQALCEEAAMMPIRELGSNILTVKANQVRRLNYEDFRKAMTVIRPSLNKSKWEELE
RWNEEFGSN
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcttgaaagggataatagactctctaggctccgccttctcttcatatagctct
gcatctccagttcaggaagaaaatcccagcgctggaacaatggaaggcgtacctgggact
tcgatcacaaatgaacgcgcggcatataagctcaaggggtactttgatttagccaaagaa
gagatcgccaaggctgtgagggccgaagaatggggtttggttgacgatgcagttttccat
tacaagaacgcccaacgaatactcgtcgaagctacttcaacacctgttccttcttatatc
agctttagtgaacaagagaaagttaaatcttatcggcaaaaaatatcaaaatggcagggt
caagtttcagacagattgcaagcattaaatcgccgagcagccggcacatcctcaaacaag
actatcttaactcatacacatggtgctgcagtttcatcatcaacatcaaattttaagcaa
gatctgtcacagaagtctcctcgttccactagaaacaatgtagtaatcaggaatcagacg
gataaacctgcaagctcaaaacctattctagattctggtagcagttatgatgcaaaattg
gttgaaatgattaatactgcaatagtggatagaagtccttctgtaaaatgggatgatgtc
gctgggcttgagaaagcgaaacaaagtctaatggaaatggttattttgccaactaagaga
agagatttgttcactgggattcggaggccagctagaggtctgcttctctttggtccacct
ggtaatgggaaaaccatgctggccaaagctgttgcttcagagtcacaggcaacattcttc
aatgtttcagcatcttccttaacatcaaaatgggtcggagaggctgaaaagcttgttcgg
actctgtttatggttgcgatatccagacagccatcagtaatttttatggatgaaattgat
agtatcatgtcaacaaggttggccaatgagaatgatgcaagtagaaggttgaaatctgag
tttctaattcaatttgatggagtaacctctaatactaatgatttagtaattgttattggt
gctaccaataagccacaagaattggatgatgctgttctaaggagactggttaagagaata
tatgtacctctacccgagaaaaatgtgaggaggcttcttttgaaacacaaactcaagggc
caagctttttccttacctgatggagaccttgagagacttgttggagatacagaaggatac
tctgggagcgatctacaagctttgtgtgaagaagctgcaatgatgccaattagagagctt
ggctcaaacattctgactgtcaaggccaatcaggtgagacgactaaattatgaagacttt
cggaaggcaatgactgtcattaggcccagtttaaataagagcaaatgggaagagcttgaa
cggtggaacgaggagtttgggtccaactaa
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