Manihot esculenta (cassava): 110615933
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Entry
110615933 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110615933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110615933
03036 Chromosome and associated proteins [BR:
mesc03036
]
110615933
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110615933
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110615933
mRNA degradation factors
5'-3' decay
Decapping complex
110615933
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110615933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
110615933
NCBI-ProteinID:
XP_021613851
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All DBs
Position
5:complement(3062394..3070859)
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AA seq
492 aa
AA seq
DB search
MNSNNRGRYPPGMGVGRGAVMNANPSFQSRVPQQQYVQRNLMQNHQQFQHQQQQQQHHQQ
QWLRRSQLPPVDSSVDEVEKTVQSEAVDSSSQDWKARLNIPPPDTRYKTEDVTATKGNEF
EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI
DQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLL
VGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFVPQNRQILMFSAT
FPVTVKDFKDRYLKKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSII
FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID
IQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ
IPPHIDQAIYCR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtaataatagagggcggtatccgccgggcatgggtgtcggtagaggcgcagtt
atgaacgcaaacccaagttttcaatcgagggttccgcagcagcagtatgtgcagaggaat
ttgatgcagaatcaccaacagtttcaacaccagcagcagcaacaacaacatcatcagcag
cagtggttgaggaggagccagttacctcctgttgattccagcgttgacgaggttgagaag
acagttcagtctgaggccgttgactccagttctcaagattggaaggcgaggttaaatata
ccaccacctgatacacgctataaaacagaggatgtgacagccacaaaaggaaacgagttt
gaggactattttctgaaacgggaattgcttatgggaatctatgagaaggggtttgaaagg
ccatctcctattcaagaagaaagcataccaattgctcttactggtagcgatattcttgcg
agagctaaaaatgggactgggaaaacagcagccttttgcattcctgccttggaaaaaatt
gaccaagataacaatgttattcaagttgttatacttgttcctactagggagttggctctt
cagacatcacaagtttgtaaagagcttggaaagcatttgaaaattcaagtaatggtcact
acaggtggtacaagtctaaaagatgatattatgcgattataccaaccagtacatttgctt
gttggaactcctggaagaatactagatcttgcaaagaagggtgtttgcattttgaaagat
tgttcgatgcttgttatggatgaggccgacaaacttctgtctcctgaatttcagccctct
gtagagcagctgatccgctttgttcctcaaaatcgtcagattttgatgttctctgccaca
tttcctgttactgttaaggatttcaaggatagatatttaaaaaagccttacattatcaat
cttatggatgagcttactctgaagggtattacacagttttatgcttttgttgaagaacgg
cagaaagttcactgtctaaacactcttttctctaagcttcaaataaaccaatcaatcatt
ttctgcaactctgtgaatcgggtagaacttttagccaagaagatcacagagcttgggtat
tcctgtttttatattcacgcaaagatgttgcaagaccatcgcaacagagtgtttcatgac
ttccgcaatggtgcatgcaggaatcttgtttgcactgatttgtttaccaggggcatagac
atccaagcagtgaatgtagttattaattttgatttccccaagaattctgaaacatatctt
cacagggttggtagatcaggaaggtttgggcaccttggtttggctgtgaatttgatcaca
tatgaggaccgctttaacttgtataggattgagcaagagcttgggactgaaattaagcaa
attcctccccatattgatcaggcaatatattgccgttga
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