Manihot esculenta (cassava): 110615939
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Entry
110615939 CDS
T05761
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110615939
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
110615939
REST complex
110615939
Heterochromatin formation proteins
Other heterochromatin formation proteins
110615939
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
110615939
NCBI-ProteinID:
XP_021613873
LinkDB
All DBs
Position
5:complement(8562842..8573070)
Genome browser
AA seq
1436 aa
AA seq
DB search
MKRSRDDVYISSQLKRPMVSSRGETSVQPQMMGGGAASGGGGGGGQKLTTNDALAYLKAV
KDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEIT
LPLDDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQE
VAMLFQDHNDLLKEFTHFLPDSSATASAYYPPSVRNSILRDRSSAMPTMRQMHVDKKDRT
TVSRADRDFSVDRPDPDHDRSLIRSDKEQRRRGETEKERKEDRDRRDQEDRDYEHDGSHE
FMQRFPPKRKSARKVEDSAAEHQGGDADENFEMRPVSSTYDDKNAVKNALTQELAFCEKV
KEKLHNPDDYQGFLRCLHLYTREIITRPELQSLVGDLLGKYPDLMDGFNEFLARCEKNEG
LLAGVVSKKSLWNEGNLPRPVKPEDRDRDRYREREDMIKERERETRDRDRLDKNVAFNNN
KDTGSHKMSLFSTKDKFLKPINELDLSNCERCTPSYRLLPKNYPIPSASQRTELGAEVLN
DHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINN
NTIKTESPIHIEEHFTALTLRCIERLYGDHGLDVMDVLRKNTSLALPVILTRLKQKQEEW
ARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDV
LLAFAAGNRRPIVPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPM
LGVPSRPQGAEDTEDVVKAKNHSSKSGDSEGSPSGGGGAAVINKHSNPSRNGGESIPPEQ
SSSCRAWLRNGDNGIKENGSPDADHIARKSDTSCSTVQHDRMQINAASADEQSAVGKQAT
NEQLVNSNTSLATGAEPSNGRTNVESGPSVPPSRPSYDTLNGGLGLGSSNEILPSPEGGD
FSRPAAVSTNGVRTEGVRNHRCNDESAAHFKIEREEGELSPNGDFEEDIFAPYEEGGLET
VQKAKDGAVSRQYQTRHGEEETCGEAGVENDADADDEGDESAQRSSEDSENASENGDVSG
SESGDCSREEHEEDGERDEHDNKAESEGEAEGMADAHDVEGDGMMLPFSERFLLNVKPLA
KHVPPALHDKEKCSRVFYGNDSFYVLLRLHQTLYERILSAKINSSSAERKWRASNDTSPT
DLYARFMGALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEM
DNKLLQLYAYEKSRKPGRFVDVVYHENARVLLHDENIYRIECSSTPTRLSIQLMDFGHDK
PEMAAVSMDPNFVAYLHNEFLSIVPDKKEKPGIFLKRNKNRCASRDECKATEGFQVFNGL
ECKIACNSSKVSYVLDTEDFLFRTKRRRTLQQSSSCHDQANISRRVQQFHGWLSSS
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggtcaagagatgatgtttacatcagctctcaacttaagaggccaatggtctct
tctcgaggggaaacttcggtgcaaccccagatgatgggaggaggagcagctagtggtgga
ggaggtggaggtggacagaaacttacgacaaatgatgccttggcatatctcaaggctgtg
aaggacatatttcaagataaaagagaaaaatatgatgactttctcgaggtcatgaaggat
tttaaagctcaaagaattgatactgcaggtgtcatagcgagggtgaaggagttatttaaa
gggcatcgtgatctaattttaggtttcaatacctttttgcctaagggatatgaaatcacc
cttcctctagacgatgaacagcctccacagaagaagcctgttgaatttgaagaagcaatt
aactttgtaaacaaaattaagacaaggtttcaaggagatgatcatgtttacaaatcattt
ttagacattttgaatatgtacagaaaagaaaataaatctatcactgaagtctaccaagag
gttgctatgctttttcaagaccataatgatctgcttaaggagtttactcattttctacct
gattcttcagctacagcctctgcttactatcctccatctgttaggaattccattcttcgt
gataggagctctgctatgcctacaatgcgccaaatgcatgttgacaagaaagacaggact
actgtttcccgtgctgatcgtgacttcagtgttgaccgtcctgatccagaccatgacaga
tctctaataaggtcagacaaagagcagcggaggcgcggtgaaacagaaaaggagaggaaa
gaagatcgagataggagagatcaggaagatagagattatgagcatgatggtagtcatgaa
ttcatgcaacggtttccccctaaacggaaatctgctcgtaaagttgaagattcagctgct
gaacatcaaggtggggatgctgatgaaaactttgaaatgcgtcctgtttcatccacttat
gatgataaaaatgctgttaaaaatgcattaacccaagagctcgcgttctgtgagaaagtg
aaggaaaagttgcataatcctgatgattaccagggatttttgaggtgtcttcatttatat
accagagaaataatcacaagaccagaattgcaatctttggtgggtgatttacttggaaaa
tatccagatcttatggatggcttcaatgaatttttggcacgttgtgagaagaatgaaggt
cttctagctggtgttgtgagtaaaaaatccttgtggaatgaaggtaatttgcccagacct
gtgaagccagaggacagggacagggatcggtatcgcgagagggaagatatgattaaagaa
agagaacgtgaaacaagggacagagatagacttgacaaaaatgtagcctttaacaataat
aaagatacagggagtcacaagatgtctttattttctaccaaggataagtttttgaaacca
attaatgaacttgacctatctaattgtgagcgctgcacgcccagttatcggcttctacca
aagaattatcccattccatcagcaagtcagaggacagaacttggtgctgaagtactgaat
gatcattgggtatctgtcacttcaggaagtgaagattactcttttaaacacatgcgtaaa
aaccagtatgaggaaagcctgttcagatgtgaagatgacaggtttgagctggacatgcta
ttggaatctgttaatgtaacgaccaaacgtgtagaagaattattagaaaagatcaacaac
aatacaataaaaacagagagtccaattcatattgaggagcactttacagctttgactctg
aggtgtattgaacgtttgtatggtgatcacgggcttgacgtgatggatgtattaaggaag
aacacttctcttgctttgccagtcatattaactcgtttgaaacagaaacaagaagagtgg
gcaaggtgtcgagctgatttcaacaaagtctgggctgaaatttatgccaagaactatcac
aagtcccttgatcatcgtagtttctatttcaagcaacaggacacaaagagcttgagcacc
aaagccttattggcagagatcaaagaaattagcgagaagaagcgcaaagaagatgatgtg
cttcttgcttttgctgctggaaacagaaggcctatcgtacctaatttggaatttgagtac
ccagatcctgacattcatgaggatttatatcagctcatcaaatactcttgtggagaagtt
tgtacaactgaacagttggacaaagtaatgaagatttggacaactttcttggaacccatg
cttggtgttccttctcggcctcagggtgcagaagacactgaagatgtcgtcaaggcaaag
aaccattcttccaaaagtggagatagtgaaggcagccctagtggtggtggtggtgctgca
gtcatcaacaagcattcaaatccttcaagaaatggaggcgaaagtatcccacctgagcaa
tcaagttcttgtagggcttggttgcgaaatggagataatgggattaaagaaaatggttct
ccagatgcagatcatatagctcgcaagagtgacacatcttgcagtactgttcaacatgat
aggatgcagattaatgcagcctcagctgatgaacaatctgctgttggcaaacaagctacc
aatgaacaattagttaattcaaacacttcacttgccactggagcagagccaagtaatgga
agaactaatgtagaatcagggcctagcgttccaccttcaagaccaagttatgatactctt
aatggtgggcttggattaggttcaagcaatgaaattttaccttcaccagagggtggtgat
ttttcaagacctgctgctgtatccacaaatggggtgaggacagaaggtgtcaggaatcac
agatgtaatgatgaatctgctgcacattttaaaattgaaagagaagaaggtgaattatct
ccaaatggggattttgaggaggatatttttgcaccttatgaagaaggcggtttagagact
gtgcagaaggcaaaggatggtgctgtaagtaggcagtatcaaacaagacatggagaagaa
gaaacatgtggggaggcaggagtagaaaatgatgctgatgctgatgatgaaggtgatgaa
agtgctcaaagatcatcagaggatagtgagaatgcctctgagaatggtgatgtatctgga
agtgagtctggtgattgctctcgggaagagcacgaggaagatggagaacgtgatgagcat
gataataaagctgaaagtgaaggtgaagctgaagggatggctgatgcccacgatgttgaa
ggagatggaatgatgttgccattttcagaacggtttcttctaaatgtgaagcctctagcc
aagcatgtccctccagcattacatgacaaagaaaagtgttcccgggttttctatggaaat
gattctttttatgtgcttttaaggcttcaccaaacattgtatgagagaatactatcagca
aaaattaattcatcatctgctgaaaggaaatggagagcttcaaatgatacaagtccaact
gacctatatgccaggtttatgggtgctctttacaacttacttgatggctcttctgataat
acaaaatttgaggatgattgccgagctattattggaacccaatcatatgttcttttcaca
ttggacaagttgatttataagcttgtcaaacagctccaaacagtggcaactgatgaaatg
gacaacaagctgcttcaactatatgcctatgaaaaatcaagaaaacctggaagatttgtt
gatgtagtttatcatgaaaatgcccgagttcttctccatgacgagaacatatatcgtata
gaatgctcttccactccaacccgtttgtctattcagctaatggactttggacatgataag
cctgaaatggctgccgtctccatggatcctaattttgtagcttatctgcataatgagttc
ctctccattgttcctgacaagaaagagaagcctgggatattcctgaaaaggaataaaaac
agatgtgcgagtcgtgatgagtgcaaggctacagaaggatttcaagtctttaatggtcta
gagtgcaagattgcatgcaattcctccaaagtatcctacgtcctagatacagaagatttt
ttgttcagaaccaaaagaaggagaactttgcaacagagcagttcatgccatgaccaggca
aatatttcaagacgagtgcagcagtttcacggatggctatccagctcataa
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