Manihot esculenta (cassava): 110615979
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Entry
110615979 CDS
T05761
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110615979
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
mesc01002
]
110615979
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110615979
03036 Chromosome and associated proteins [BR:
mesc03036
]
110615979
Peptidases and inhibitors [BR:
mesc01002
]
Metallo peptidases
Family M1
110615979
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110615979
Coactivators
SAGA/TFTC/STAGA complex
110615979
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
110615979
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF2_3rd
TPR_TAF2_C
Peptidase_M1
HEAT_2
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
110615979
NCBI-ProteinID:
XP_021613947
LinkDB
All DBs
Position
5:12553575..12588155
Genome browser
AA seq
1376 aa
AA seq
DB search
MAKPRKPKIDDSKPDNSGAVVRHQKLCLSIEMDKRQIYGYTELELAVPDIGFVGLHAENL
GIENVFVDGEPTEFEYYPRQQNAVESEKRWSCVSTPSSAADTAASAYISALEKELVPNLL
INCCKTFRPSNEQQDQVNLDNGEAKQNVKLVRINYWVEKAETGIHFNDNVLHTDNQIRRA
RCWFPCIDADSQRCCYDLEFTVARHLVAVSTGNLLYQVLRKDDHSYKTYVYRLDIPVTAQ
WISLVVAPFEILPDPHVGFISHMCLPSNLAKLQNTVEFFHNAFNHYEEYLDAKFPFGSYT
QVFLAPEMAVSSSSLGASVSIFSSQVLYDERVIDQTIDTSIKLAFALAKQWFGVFIVPEE
PSDEWLLDGLAGFLTDLFIKKFLGNNEARYRRYKANCAVCKADDSGATALTSSASCKDLC
GTHCIGIYGKIRSWKSVAILQMLEKQMGPESFRKILQKVVFRARDTIPVRSLSTKEFRHF
ATKVGNLERPFVKEFFPRWVGSCGCPMLRMGFSYNKRKNMVELAVLRECTAVPDASTSVL
NPDSDNRDGDIGWPGMMSIRVYELDGMYDHPVLPLAGEMWQLLEIQCHSKLAARRFQKPK
KGSKPDGSDENGDAIPATDIRSSLESPLLWIRADPEMEYLAEIHFNQPVQMWINQLEKDE
DVVAQAQAIAALEALPQLSFSVVNALNNFLSDSKAFWRVRIEAAFALANSASEENDWSGL
LHLVKFYKSRRFDATIGLPKPNDFHDFPEYFVLEAIPQAVATVRAADKKSPREAIEFVLQ
LLKYNDNTGNPYSDVFWLAALVQSVGQLEFGQQNVIFLSSLLKRIDRLLQFDRLMPSYNG
ILTISCIRTLVQIALKLSGSVHLDHVFELIKPFQDIKTIWQIRIEASRALMDLEFHYRGI
DAALSLFIRYLKEEYTLRGQAKLAAHAMRLCQIQNGSDPQDDIKSTTLVALLGLLEGHVS
FNNIYLRHNLFCILHILAGRAPTLYGVPRDKSLCLGDAETSAEPKNIFAALIPETKPLER
PGEIPKLDQDNVANQEAPKEADTISSNLRHEMGHEMDLIIIEDFKEPDTISNNPEQKMDS
TIPESLKDADTVSNNQERKMPVVKIRVKKSAASSRAEEADNQTVERSQGRHHETDRGATS
SVSVDAPQRNSAEAVSASNQNIEEVNSCLDHGSRMTASIGSAKFASDGDNFGKELQCTAD
SSKVFVHPQPEDPSSPSVMQDNHVDSGAQKYASLQTLSVGKFEHDGGSSIAAVSPFRGRE
KEKKKDKEKKRKREDHKGHRDDPEYLERKRLKKEKKLKEKEMAKLLSDEAKASSVDSHIK
KQEPNSIKLATVQLKPRESSGSKMVNSNVETKPEPSEGNSAPRFRIKIKNRTLNKS
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccgcgtaagccgaagatcgacgactccaagcccgataattccggagctgta
gtccgtcaccagaagctctgcctttccatcgaaatggataagcgccaaatctacggttac
acggagttggaacttgcggtgcctgacattggatttgtcggcttacatgcggagaattta
ggtatcgagaatgtttttgtggacggggagcctacggagtttgaatactacccacgtcag
caaaatgcggtggaaagtgagaaaagatggagctgcgtttccactcctagttcagctgcc
gatactgctgcctctgcgtatatttcagcacttgagaaagaactggttcccaatcttctc
attaactgttgcaaaactttcaggccttcaaatgaacaacaggatcaagtgaatctagat
aatggtgaagccaagcagaatgtgaaattggttcgcattaattattgggtagagaaagcg
gagacagggattcactttaatgataatgtactacacactgataaccagataaggcgtgca
aggtgctggttcccatgtatagatgcagactcacaacgttgctgttatgatctggagttc
actgttgcccgtcatcttgttgctgtcagcactggaaacttactctaccaggttttgagg
aaggatgatcattcttataaaacatatgtctacagattagacatacctgtgactgctcaa
tggatatcgttagtggttgcaccatttgaaatccttcctgatccccatgttggtttcata
tcgcacatgtgcttgccatctaatcttgcaaaacttcagaatactgtggagttctttcat
aatgctttcaaccattatgaagaataccttgatgcaaaatttccatttgggtcatacaca
caagttttcttagcacctgagatggcggtatcctcatcaagtttgggagcttctgttagc
atctttagttctcaagttttatatgatgagagggttattgaccagaccatagatacaagc
attaagctagcttttgcacttgcaaaacagtggtttggagtttttatagtcccagaggaa
cccagtgatgaatggcttctagatgggctggctggcttcttgacagatttgtttatcaag
aaatttttaggaaataatgaggcgcgatataggaggtacaaggcaaattgcgccgtctgc
aaagcagatgatagtggtgctacagctttaacctcctctgcttcttgtaaggatttatgc
ggaacccattgcattggtatatatgggaaaatacgatcttggaagtctgtggcaatcctg
caaatgttggaaaagcaaatggggccagaatccttccgcaaaattttgcagaaagtcgtc
tttcgtgctcgggatacaatccctgtgagatctcttagtacaaaagagtttcggcacttt
gctactaaggttggaaatctggagcgcccatttgtgaaagaattttttcctcggtgggtt
ggctcatgcgggtgtcccatgttgaggatggggttctcatataataaaaggaaaaatatg
gttgaactggcggtgctaagagagtgcacagctgtccctgatgcaagtacatcagttctg
aatcctgattctgataatcgtgatggagatattggatggcctgggatgatgagcatcagg
gtttatgaacttgatggcatgtatgaccacccagttcttcctttggctggtgaaatgtgg
cagcttctggaaattcagtgccattccaaacttgctgctaggcgctttcagaagcctaaa
aagggttcaaaacctgatggatctgatgaaaatggtgatgccatacctgcaacagatatc
cgctccagtttggaatcccccttattatggatccgtgcagatccagaaatggagtatctt
gctgaaattcattttaatcaaccagtgcagatgtggattaatcagttagagaaggatgaa
gatgttgttgctcaagcacaagcaattgcagcgttggaagctttaccgcagttatcattt
tctgttgtaaatgccctgaataatttcctgagtgactccaaggctttctggagagttcga
attgaggcagcattcgcattggctaattcggcatctgaggaaaatgattggtctggtcta
cttcatttggtgaaattttacaaaagcagaagatttgatgcaacaattggactccccaag
ccaaatgactttcatgattttcctgagtacttcgttcttgaggcaattcctcaagctgta
gcaacagttagagctgcagacaagaaaagcccaagggaagctattgaatttgttttgcag
cttcttaagtataacgataacactggaaatccatattctgatgtgttctggcttgctgca
ttagtccagtcagtgggtcaacttgaatttgggcaacagaatgttatctttttatcatct
cttctcaagcgcatcgatcggcttttgcaatttgacaggctgatgcctagttacaatggt
atattaacaatcagctgcatccgcacattggtacaaattgccttgaagctgtctggatct
gttcatcttgatcatgtgtttgaacttattaaaccttttcaagatattaagacaatctgg
caaattcgaattgaagcaagcagagcactcatggatctggaattccactacagaggcatt
gatgcggcattgtcattgtttatcagatatttgaaggaagaatacaccttaagagggcaa
gcaaaacttgctgcacatgctatgcggttatgtcagatacaaaatggttctgatccccag
gatgatatcaagagtacaacgcttgtggcattgcttggtttgctcgaaggacatgtatca
ttcaacaatatatatcttcggcataatttgttctgcatcttacatatccttgcaggaagg
gcgccaacactttatggggtccccagggataaatcgttatgtcttggtgatgctgaaaca
tctgctgaaccaaagaacatttttgcagctctcatcccggaaacaaagcctctggagcgt
cctggagaaattccaaaacttgatcaggataatgtagctaatcaagaggctcccaaggaa
gcagatacaatttccagcaaccttcgtcatgagatgggtcatgagatggatttgatcatc
atagaagatttcaaggagcctgatacaatctctaacaatcctgaacagaagatggattca
accattccagaatctttgaaggatgcagatactgtctctaacaatcaagaacgtaagatg
cctgttgttaaaattcgagtaaaaaaatctgctgcttctagtagagcagaggaggctgat
aatcaaactgttgagagatctcaaggccgacatcatgaaactgatcgtggagcaaccagc
tcagtttctgtggacgcaccccaaaggaattcagctgaggctgtgagtgctagcaatcaa
aatattgaggaagtcaattcgtgtcttgatcatgggtcccggatgacggctagcattggc
agtgcaaaattcgcaagtgatggtgacaattttgggaaggaactccagtgcactgctgat
tcaagcaaagtttttgtgcatcctcagcctgaggatccttcatcacctagtgtcatgcaa
gataaccacgttgacagtggtgcacaaaagtatgctagtctgcaaacgctatcggttgga
aaatttgagcatgacggcggttcatcaattgccgcggtatctccttttcgtgggagggaa
aaggagaagaaaaaagataaggaaaagaaacggaaacgggaagatcataaagggcacagg
gatgatcccgagtacctggagcggaagagactgaagaaagagaaaaaactgaaggaaaag
gaaatggcaaagctgcttagtgacgaagcgaaggcatcttcagtggactcgcacattaag
aaacaggaacccaacagcattaagttggcaactgtgcagttgaaaccaagggaatccagt
ggttccaaaatggtgaattcgaatgtcgaaaccaagcctgagccatcagaaggtaactct
gcacctagatttcgaattaaaattaagaacaggacgctgaataaatcatag
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