Manihot esculenta (cassava): 110616067
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Entry
110616067 CDS
T05761
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110616067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110616067
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
110616067
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Ortholog
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GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
110616067
NCBI-ProteinID:
XP_021614073
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All DBs
Position
1:42040347..42053949
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AA seq
705 aa
AA seq
DB search
MGVGGFVAARGSDSESSNQQEGLILLLDVGPSMHNVLPEVEKLCSMLIQKKLIYRKFDEV
GIVIFGTEDTDNELTMEVGGYEHVVVLRNIKVVDGDTVESLQKLPRGTVSGDYLDAIVVG
MDMMIKKYQSTNKGKKHICLITDARNPIKGPYEGTKEDQVITIAVQMAAHGVRMKTIVVR
GRLSEDADRRIVDENDRLLHLFSEKTSAKTVYVENSTSLLGALKTRNISPVTIFRGDLEI
SPKLKIKVWVYKKTSEEKFPSLKKYSDKAPPTDKYATHEVKVDYEYKSVEDPGKVVPPHQ
RIKGYRYGPQVVPISSVEWDAFKFKPEKGVKLLCFTDASNILRHYYIKDVNIFIAEPSNV
RATIAVSALGRAMKELNKVAIVRCVWRQGQGNVVLGVLTPNLSENDKIPDSFFFNVLPFA
EDVREFQFPSFSSYPASLQPSEQQQKAADNLVMMLDLAPPGKEEALLPDFTPNPILERFY
HYLELKSKQPDAAVPSLDRTLKRITEPDPQLFSESKSVIESFCQSFEVKKNPKLKKSTRR
FLREKPSGSDDEGGYGDASNALAIKSDEIKLLVKVDKIGDSTPIQDFEAMMSRRDSPDWV
AKAIKDMENKICNIVENCRGGDNFHKALECLVALRKGCILEQEPKQFNEFLHHLFRLSQE
KNLGSFWEFLASKDITLISKSEAIDSEVTDDEARKFLVKREPKLE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgggtggttttgttgctgctcgcggatctgattctgaatcctccaatcaacag
gaaggattgatattgttacttgatgttggtccgtcaatgcacaatgttcttccagaggtt
gaaaaactctgttccatgctcatacagaaaaagctaatttacagaaaatttgatgaagtt
ggaattgtcatatttggaactgaagacactgacaatgagctgacaatggaagttggtgga
tatgagcatgttgtggttttgcgaaacatcaaggttgttgatggagatactgttgaatca
ttacaaaaacttccacgaggaactgtttccggtgattatcttgatgctattgttgttggt
atggatatgatgataaaaaaatatcaatcgacaaacaaaggaaaaaagcatatctgtctt
ataacagatgcacgaaatcctattaaaggtccatatgaaggaaccaaagaagatcaagtg
atcactattgctgttcaaatggctgcacatggagtgaggatgaagactattgttgtaaga
ggaagactaagcgaggatgcagatcggagaatagttgatgagaatgaccgcctcttgcat
ctattttcagagaaaacatctgctaagactgtatatgttgagaattcaacctcattgtta
ggtgcacttaaaactcgaaatatttcgccagttacaattttcaggggtgaccttgaaatc
agtcccaagttgaagattaaggtatgggtgtacaagaagacctcggaggagaagttcccc
agtctgaagaaatattctgataaagcacctccaactgataaatatgccacacatgaagtc
aaagtagattatgagtacaaaagtgttgaagatcctggtaaggttgtaccgccgcatcaa
aggattaagggttatcgatatggaccacaagtggttcctatatcatcagttgagtgggat
gctttcaagttcaagccagaaaagggtgtgaagcttctttgtttcactgatgcatcaaac
atattgcgacactattatataaaagatgtgaacatctttatagctgaacccagcaatgtg
agggctacaattgctgtttctgccttaggaagagcaatgaaggaattgaataaggttgca
attgtgcgttgtgtttggagacaaggacaggggaatgttgttttgggggttttgacaccc
aacctatctgagaacgacaagattcctgattcatttttcttcaatgtgcttccttttgct
gaggatgtccgagaatttcagttcccttctttcagcagttaccctgcctcacttcagcct
agtgaacagcagcaaaaggcagcagacaaccttgtaatgatgcttgacctggcaccacct
ggaaaagaggaagctcttcttcctgacttcacgccaaatcctattctggagcgcttctat
cattatcttgagctaaaatcaaagcaaccagacgctgctgtaccctcattagacagaacg
cttaagaggataactgaacctgatccacaacttttttctgaaagcaaatctgttattgaa
tcattctgtcaaagctttgaagttaagaagaatccaaagctaaagaaatcaaccaggcga
tttttgcgagagaagccatctggctcagatgatgaagggggttatggagatgcatcaaat
gctctagccatcaagtctgatgaaatcaaactcttagttaaggttgataaaattggggat
tcaactcctatccaagattttgaagccatgatgtcccgcagagatagcccagattgggtc
gctaaagcaatcaaagatatggaaaataagatatgcaacatagtggagaattgcagagga
ggggataacttccataaagcattggaatgtttggtagcccttcgcaagggttgcatcctt
gagcaggaaccaaagcaattcaacgaattccttcaccatctttttagactcagccaggag
aaaaaccttggcagtttctgggaatttcttgcttccaaagatatcacattgatttccaag
tcagaagccatagacagtgaggttacagatgatgaagcgagaaagtttctggttaaaagg
gagccaaagctggagtga
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