Manihot esculenta (cassava): 110616600
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Entry
110616600 CDS
T05761
Name
(RefSeq) serine/arginine-rich splicing factor SC35-like
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110616600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110616600
Spliceosome [BR:
mesc03041
]
Common components
Common spliceosomal components
SR proteins
110616600
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
110616600
NCBI-ProteinID:
XP_021614718
LinkDB
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Position
6:complement(1984243..2001945)
Genome browser
AA seq
250 aa
AA seq
DB search
MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKCGKVVDIFIPKDRRTGDSRGFA
FVRYKYADEAQKAVDRLDGRVVDGLEITVQFAKYGPNAERIHKGRIIEPVPRSRYRSQSR
SPRRRYRDDYSDRDYRRRSRSRSLDRYEHENYRGRDRDYHRRSRSRSASPDYSRGRGRGR
YDDECRSTSRSVDSASPVRQSRSPRRSSSPRKNSPSKGESPDRHSRGGRSPSPRSVSPSG
RPSASRSPSP
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatttcggcaggtctggccctccggatatcactgacacctactctctcctcgtc
ctcaacatcaccttccgtactactgcggatgatttgtttccgctttttgacaagtgcggg
aaggtcgttgacatcttcatccccaaagatcgaaggactggtgattctcgtggctttgca
tttgtgcgctacaaatatgcagatgaggcacagaaggcagtggataggctagatggaaga
gttgttgatgggcttgagataacagttcagtttgcaaaatatgggcccaatgctgagagg
attcataaaggaaggatcatcgaacctgttccaaggtcaagatacaggtctcagagtcgc
agtcctcgaagaaggtaccgagatgactacagcgatagagactataggaggagaagtcgc
agcaggagtttggacaggtatgagcatgaaaactatcgtggaagggacagagactatcat
cgacggagcaggagtcgcagtgccagtcctgattactctagaggccggggtagaggacgt
tatgatgatgaatgtaggagtaccagtcgatcagtggatagtgcttcccctgttagacaa
agcagaagtcctcgaaggagttcttctccccgcaagaattctccttctaaaggtgaaagc
cctgatagacacagccgtggtggtcggtctccatctccacgaagtgtctctcctagtggt
cgaccttctgcttctcgtagcccttccccatga
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