Manihot esculenta (cassava): 110616678
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Entry
110616678 CDS
T05761
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mesc01009
]
110616678
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110616678
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
110616678
Protein phosphatases and associated proteins [BR:
mesc01009
]
HAD phosphatases
Fcp/Scp phosphatases
110616678
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
110616678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
110616678
NCBI-ProteinID:
XP_021614822
LinkDB
All DBs
Position
6:6215706..6224625
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AA seq
652 aa
AA seq
DB search
MRSTTMEKDQPITVTDTVYKLQHHLLEGIKNEDQLFAAGSLMSHSDYEDVVIERSIANLC
GYPLCNNSMPLDRPHKGRYRISLKEHKVYDLHETYMYCSSSCVVNSRAFAGSLQEERCSV
LNPMKLNDILRMFDNLSLDYECLGENGDLGLSNLKIQEKMVGSVGEVSVEEWIGPSNAIE
GYIPQRDRVSINSPSKDNSKEGPKAKCTKPVNKQDCFFNDMDFMSTIITEDEYNISKAPS
GSSSTASVINVQEQGGKEIREGLKQSSSPGKHGSNKTSRKSQGGKSKKVAKGDLSSQDLP
TSNYSQVSSSASDAEVEEKSKIKKAANLSEAMLKPSLKAFGAKKSNRSVTWADEKIDAGS
RNLCEVREMEDKKAVLDTPDSMDGGHDGNMLLFESAEACAVALSQAAEAVASGDADPSDA
MSEAGVIILPHPHDTDNVEMLERESSSVKWPTKEIPGADLFDSEDSWYDAPPEGFSLTLS
PFATMWMALFAWVTSSSLAYIYGRDDESSYEDYLSVNGREYPRKVVLRDGRSSEIKHTIE
GCLARSLPGLVADLRLPIPMSRLEQGVGHLLETMSFFDAVPAFRMKQWQVIAFLFVEALS
VCRIPVLTSYMTNRRMMLHQILDGSQISAEEYEVMKDLMIPLGRDPRARSGA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagatctactacaatggaaaaggatcaaccaattactgtgacagacactgtttataag
ttgcaacatcaccttcttgagggcataaaaaatgaagatcaactatttgcagctggatct
ttgatgtcgcatagtgactatgaagatgttgttattgagcggtcaattgcaaacctgtgt
ggctatccgctttgcaacaattctatgccattagatcgtcctcataaaggtcgatatcgc
atttcgttgaaggagcacaaggtttatgatctacatgagacatacatgtattgctcttcc
agttgtgttgttaatagtcgagcttttgcagggagtttacaagaagagagatgttctgtt
ctgaatccaatgaaacttaatgatattctaaggatgtttgataatttgagtttagattat
gaatgtttgggggaaaatggggacttggggctgtctaacttaaagattcaggagaagatg
gtaggcagtgtgggggaggtctctgtggaagagtggattggtccatcaaatgcaattgag
ggctatattccacaacgagatcgtgtttccataaattcaccatcaaaagataattccaaa
gaaggaccaaaagctaagtgtaccaaaccagtcaataaacaagattgtttctttaatgac
atggactttatgagcactataatcactgaagatgagtacaacatttcaaaagctccctct
ggttcatcaagcactgcctctgtcataaatgtacaagagcaaggagggaaagaaattcgt
gaaggcttaaaacagtcatcatctcctggaaagcatggctccaataagacatcaagaaag
tcacaaggggggaagagtaaaaaggttgcaaaaggtgatcttagtagccaagacctgccc
acttcaaattattctcaggtcagttcaagtgcaagtgatgctgaagttgaagaaaaatct
aaaattaagaaagccgctaatttgagtgaagccatgctcaaaccctctcttaaagctttt
ggtgcaaagaaatctaatcgctctgttacttgggctgatgagaaaattgatgctggaagt
agaaatctttgtgaggtcagggaaatggaagataaaaaggcagttcttgatactcctgac
agtatggacgggggacatgatggtaacatgttgctatttgaatcagcagaagcgtgtgct
gtagcattgagccaagcagcagaagctgttgcatctggagatgctgatcctagtgatgct
atgtctgaagctggagtcatcatattaccacatccacatgatacagataacgttgaaatg
cttgaacgagaatcttcttctgttaagtggccaacaaaagagattccaggggcagattta
tttgactctgaggattcatggtatgatgctccgccagaaggatttagtttgacgttatcc
ccttttgcaacaatgtggatggcactctttgcatgggtgacttcgtcttcgttggcttat
atatatgggagagatgatgaaagttcctatgaagattatttatctgttaatggcagggag
taccctcgaaaggttgtcttgagagatggccgttcttctgaaatcaagcataccattgag
gggtgtcttgctcggagtttacctggacttgtagcagatctcaggttgccaataccaatg
tctagactggagcaaggagtggggcacttgttggaaacaatgtccttttttgatgcggtt
cctgcattcagaatgaaacaatggcaagtcatagcttttctctttgttgaggctttatct
gtatgtaggatcccagttctcacttcatacatgactaatcggaggatgatgcttcaccag
atccttgatggttcccagataagtgcagaagagtatgaggttatgaaggatctcatgata
cctctcggccgagaccctcgagctaggagtggagcatag
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