KEGG   Manihot esculenta (cassava): 110616732
Entry
110616732         CDS       T05761                                 
Name
(RefSeq) WD repeat-containing protein RUP2
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc04120  Ubiquitin mediated proteolysis
mesc04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    110616732
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    110616732
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mesc04121]
    110616732
Enzymes [BR:mesc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110616732
Ubiquitin system [BR:mesc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    110616732
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     110616732
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 WD40_WDHD1_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EML Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_DCAF12 WD40_like Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 WD40_CFAP43 NBCH_WD40 Beta-prop_Nup120_160 YNR034W-A-like Beta-prop_Vps41 WD40_RFWD3
Other DBs
NCBI-GeneID: 110616732
NCBI-ProteinID: XP_021614901
LinkDB
Position
6:27283328..27284937
AA seq 410 aa
MGTFHWSKRRKRYNINISTRYGEWAMKNPSDQFHPATRVEALIQEDQETQTIDHHGEEKA
RCEWDFSLETVVSSSSRGAGSDALGVIQFDQSETILATGGIARKIRIYNVNSLLPHEGSQ
NGSDVALLDHSKACEYYICTPAKLSSLRWKPGSNSRVIVSGDYDGVVLEYDLERKVPIFE
RDEHGGRRVWSVDYSHCDPMLGASGSDDGTMQMWDPRCEGDGGCVATVQPSVTRRAVCSV
EFNPFGGSMIAVGCADRRAYGYDIRMMKDPVFVLDGHKKTVTYVRFVNELTLVTAGIDGC
LRMWNLHDSQMIRTYKGHVNNRNFVGLSVWRNGGLLGCGSEDNTVFVYDKRWGEPIWMHG
LEPVGDHGFVSSVCWRQVREDECTLVAGGSDGVLQLFKGKRKTDAATGSR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atgggaacctttcattggtccaaacgccgaaaacgttacaacattaacatctctacgaga
tacggtgaatgggcaatgaaaaacccgtctgatcaattccatcctgcaactagggttgaa
gcgctaatacaagaagaccaagaaacccaaaccatagaccaccacggagaagaaaaagct
agatgtgaatgggatttcagtcttgagacggtggtttcgtcaagcagccgtggagctggg
tccgatgccctcggtgtaatccaattcgaccagtctgaaaccatccttgccaccggtgga
atagccagaaagataagaatctacaacgtcaattctttgcttcctcatgaaggtagccaa
aatggaagcgatgttgctttgttagaccattctaaagcatgcgagtactacatatgtaca
ccggctaagcttagcagtctccgatggaaacctggttctaatagccgtgttatagtgtcc
ggagactatgatggagttgtgctggagtatgatcttgagagaaaagtaccgatcttcgaa
cgcgacgagcatggcgggcgtcgggtatggagcgtggactattcgcattgtgatccgatg
ttgggtgcgtctggatccgacgatggcaccatgcaaatgtgggacccacgttgtgagggg
gatggtggatgtgtggctacagttcaacccagcgtgacccgcagggccgtatgtagcgtg
gagtttaatccgtttggtggatcaatgatagccgttggatgtgctgacaggagagcatac
gggtacgatatccggatgatgaaagacccggtattcgtgcttgacgggcataagaaaacg
gtgacatacgtcaggtttgtgaatgagcttacattggtaacagcaggaattgatgggtgc
ttaaggatgtggaatttacatgattcccaaatgattcgcacgtacaaaggacacgtgaat
aacaggaacttcgttggattatcagtgtggagaaatggaggtttattggggtgcggatcc
gaagacaacacagtgttcgtttacgacaagaggtggggcgagcccatatggatgcatggg
ttggagccagtgggcgaccatgggtttgtaagcagcgtatgttggaggcaagtgagggag
gacgaatgtacactagttgcaggaggatcagatggggtcctgcaactttttaaaggcaaa
aggaagacagatgcagccactggttcaagataa

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