Manihot esculenta (cassava): 110616807
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Entry
110616807 CDS
T05761
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110616807
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mesc00535
]
110616807
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
110616807
Meiosis-specific proteins
Cohesin complex and associated proteins
110616807
Proteoglycans [BR:
mesc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110616807
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
Phage_lysis
Motif
Other DBs
NCBI-GeneID:
110616807
NCBI-ProteinID:
XP_021614991
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Position
6:987511..1006099
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AA seq
1204 aa
AA seq
DB search
MHIKQVIIEGFKSYREQVATEPFSPKINCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED
RHALLHEGAGHQVLSAFVEIVFDNYDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
ETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDRQRKSLEYTIYDKELHDARQKLG
EVEEARNKVSETSAKMYNSVLDSHERSKDLDKMLKDLTKEVQGLNKEKEIVEKRQTEAIK
KQTELELDVKDLQERISGNVQAKEDAMKQLDMLQREIQDSMEELDKISPLYENQVTKEKD
ITKGIMEREKQLSILYQKQGRATQFSSKAARDKWLQKEIDDLQRVLSSNLAQEQKLEDEI
SKLHVDLEERDAYIENRKADIAALESLISESREGFNNHKAQRDKLQDERKSLWGKESALI
AEIDKLRAEVEKAEKSLDHATPGDVRRGLNSIRRICRDYKINGVFGPIIELLDCDEKFFT
AVEVTAGNSLFHVVVENDEISTQIIRHLNSSKGGRVTFIPLNRVKAPRVTYPQSSDVIPL
LKKLKFSPNFTPAFSQVFARTVICRDLDVATRVARTDNLDCITLEGDQVSKKGGMTGGFY
DHRRSKLKFMNIIMQNTKSINLKEEELEKVRSMLQDIDQKITERVTEQQKIDAKRSHDRS
ELEQLKQDIANANKQKQFISKALEKKGKSLADVRTQIDQLKGSMAMKQAEMGTELIDHLS
PEEKDLLSRLNPEIADLKEKLIACRTDRIETETRKAELETNLTTNLKRRKQELEAIISSA
ETDLSYNEADLKRQELTDAKSLVEVTTQEMKRVSDSIDEITKQLKKIKDEKIKLKALEDN
YERTLQDEAKELEQLLSKRNILQAKQEEYSNKIRELGPLSSDAFETYKRKSIKELHKMLH
RCNEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIE
RTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDQGDDDYDDDGPSEADLEGRVEKYIGV
KVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAV
GNMIRRLADMANTQFITTTFRSELVKVADKIYGVTHKNRVSRVNVVSKEDALDFIEHDQS
HNAE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcatataaaacaggttataattgagggttttaagagttacagagaacaagtggctact
gagcctttcagtccaaaaattaattgtgtcgttggcgctaatgggtccggaaaaacaaac
ttctttcacgccattcgttttgtactgagtgacctctttcaaaacctgcggagtgaagat
aggcatgcactgctccatgaaggtgcagggcaccaagttttatctgcttttgtggagatt
gtgttcgataattatgacaatcgcattccggttgataaggaggaggtacgtctgcgtaga
acaattggtttgaaaaaggatgaatattttctggatgggaagcacattacgaagacagaa
gtgatgaatctactagaaagtgctgggttctcccgttccaatccatactatgtagtgcag
caaggaaaaatagcatcattaacattgatgaaagactcggagcgtttggatttactgaag
gaaattggtggaactcgagtatatgaggagaggcgccgtgaaagtttgaaaattatgcaa
gaaacaggaaacaaaagaaagcagataattcaagttgttcagtacttggatgagaggcta
aaggagctggatgaagagaaagaggagctcagaaaatatcagcagcttgatagacagcgt
aaatctttagaatataccatttatgataaggaactccatgacgctcggcagaagctgggg
gaggtagaagaggctcgaaacaaggtttctgaaacatcagccaagatgtataatagcgtg
ttggattcccatgaaaggtccaaggatttggacaagatgcttaaagatcttacaaaagag
gttcaaggattgaacaaagagaaagagatagtggagaagcgacaaactgaagcaataaaa
aaacagacagagcttgagcttgatgtaaaggatctgcaagagaggatttctggaaatgtc
caagctaaagaggacgcaatgaagcagcttgatatgcttcaaagagaaatacaagattca
atggaggagcttgacaaaatcagcccattgtatgagaaccaagttacaaaagaaaaggat
atcactaaaggaatcatggagcgcgaaaagcagcttagcattctttaccaaaaacagggt
cgtgccacccaattctccagcaaagctgctcgtgataaatggctgcagaaggaaattgat
gatctacaacgtgttctttcttcaaatttggctcaggagcaaaaacttgaggatgaaatt
tctaagcttcatgtggacttggaagagcgagatgcctacattgagaatcgaaaagctgat
attgcagcattagaatctcttatatcagagtcccgtgaaggttttaataatcataaagca
cagagagacaagctgcaggatgagcgaaagtcattgtggggaaaagaaagtgcacttatt
gctgaaattgataagctgagagcagaagttgagaaggctgagaagagccttgatcatgca
acccctggtgatgtaagaagaggtctaaattctattcggcggatatgtagagactataag
atcaatggagtatttggtccaattattgagttgcttgattgtgatgaaaaatttttcact
gctgttgaagtcacagctggaaacagcttatttcatgtggtggttgagaatgatgaaata
tcaacccagataattagacaccttaattcatcaaaaggtggacgtgttactttcatacca
ctgaacagggttaaggctccacgtgtaacttatccgcaaagttctgatgtgatacctctg
ctaaagaaattaaagttctctcctaatttcacccctgcattttcccaggtatttgctaga
actgtgatttgccgagatttagatgttgccactagagttgctcgaactgataatctggac
tgtataactttagaaggtgatcaagtaagcaagaaaggtggtatgacgggtggtttttat
gaccatcgacgttcaaaactgaagttcatgaatataattatgcagaatacaaaatccatc
aacctcaaggaagaagagttggaaaaagttagatctatgctacaagatatagaccagaaa
attactgaacgtgtaactgagcagcagaagattgatgccaagcgatctcatgacagatca
gagttggaacaactgaagcaggatattgctaatgctaataagcagaaacaatttatttca
aaagctcttgaaaagaagggaaagtcacttgcagatgtccgaactcaaatagatcagctt
aaaggcagtatggccatgaaacaagctgagatgggaacagagctcattgatcacttatca
ccagaagaaaaagatcttctatcacgattgaaccctgaaatagcagatctcaaagagaag
cttatcgcctgtagaacagatcgcattgagactgaaacaagaaaagcagagctagagact
aatcttacaactaatctgaaaaggcgaaagcaagagttggaagccataatatcgtctgca
gagactgatttatcatataatgaagctgatttgaagaggcaggaattgacagatgctaaa
tcattggttgaagttacaacacaggaaatgaaaagagtttctgacagtatagatgaaata
accaagcaactcaaaaagatcaaggatgaaaagatcaagttaaaggctctggaagacaac
tatgagagaactcttcaggatgaagcaaaagaattagagcagttattgagcaaaaggaat
attcttcaagccaaacaagaggagtattctaacaaaattagggaattgggccccttgtca
tcggatgcttttgaaacgtacaagcggaagagcattaaggagttgcataaaatgcttcat
aggtgcaatgaacaactgcaacagtttagtcatgtcaataaaaaggcgctagatcagtat
gtgaacttcactgagcaacgagaagaacttcagaaaaggcaagctgaacttgatgcaggt
gatgagaaaattagagaacttatatctgttctggatcaacggaaggatgaatctatagaa
cgtacttttaaaggtgttgctcgacattttcgagaagtattctctgaacttgtgcaaggt
ggacatggtcatctagtgatgatgaagaaaaaggatggcgatcaaggtgatgatgactat
gatgatgatggtcctagtgaagcagatttggaagggagagttgagaaatacatcggcgtg
aaagtaaaggtttccttcacagggcaaggtgagacacaatctatgaagcaattgtcagga
ggtcagaaaactgttgttgccctgacattgatctttgccatacaacgatgtgatcctgcc
cctttttatctatttgatgagatagatgcagccctagaccctcagtacagaactgctgtt
ggaaatatgattcgtcgcctggctgacatggcaaatacacaatttataactacaacattc
agatcagagctcgtgaaagttgctgataagatatatggcgtcacacacaagaacagggtg
agccgtgtcaatgtggtctccaaggaagatgcattagattttattgaacacgatcaatct
cataatgcagaataa
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