KEGG   Manihot esculenta (cassava): 110616858
Entry
110616858         CDS       T05761                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    110616858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110616858
   03009 Ribosome biogenesis [BR:mesc03009]
    110616858
   04131 Membrane trafficking [BR:mesc04131]
    110616858
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mesc04147]
    110616858
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     110616858
Ribosome biogenesis [BR:mesc03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    110616858
Membrane trafficking [BR:mesc04131]
 SNARE
  SNARE associated proteins
   Others
    110616858
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    110616858
Exosome [BR:mesc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   110616858
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 CDC48_2 AAA_5 AAA_33 AAA_14 AAA_22 TIP49 NPHP3_N RNA_helicase AAA_17 AAA_28 Mg_chelatase nSTAND3 AAA_18 IstB_IS21 Parvo_NS1 ATPase_2 ABC_tran Viral_helicase1 AAA_7 NACHT NB-ARC DUF815 TsaE Sigma54_activat AAA_24 ResIII AAA_lid_PRS2_C Zeta_toxin Vps4_C RCF1-5-like_lid Zot Molydop_binding
Other DBs
NCBI-GeneID: 110616858
NCBI-ProteinID: XP_021615053
LinkDB
Position
6:23992953..23996977
AA seq 813 aa
MAYSSFSQPSSSSGPKSGKRDYSTAMSERKMSPNRLVVDEAINDDNSMVSMHPATMKKLQ
FFRGDTVLIKGKKRRDTVCIVLADEQCEESKIRINKVVRANLRLHIGDVVSVHQCPDVKY
GKRVHILPIDDTIEGVAGNLFDAYLKAYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDP
GEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK
SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFE
EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN
SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLERVAKDTHGYVGADL
AALCTEAALQCIREKMDGIDLEDDTIDVEVLNSMAVTNEHFQTALGSSNPSALRETVVEV
PNVSWDDIGGLENVKKELQETVQYPVEHPDKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI
ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG
DAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEA
SRFQIFKACLRKSPVSRNVDLAALARYTHGFSGADITEICQRACKYAIRENIEKDIERDK
RNQENPEAMEEDGVDVVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGTE
FRFSDRTETAEAGGASDPFASATTAGDDDDLYS
NT seq 2442 nt   +upstreamnt  +downstreamnt
atggcgtattcaagctttagccagccatcctcttcctctggcccgaaaagtggtaagagg
gattattcaactgcaatgtcggagcgaaagatgtctcccaaccgtcttgttgttgatgag
gccattaatgatgacaattctatggtctctatgcatccagctaccatgaaaaagcttcaa
ttttttcgaggagacactgtgctaattaagggaaaaaagagaagagacacggtttgcatt
gttctggctgatgaacaatgtgaagaatcgaaaatcagaataaacaaagttgtcagagcc
aatcttagattacacattggagacgtagtgtctgttcatcagtgtccggacgtgaagtat
gggaagcgggttcacatccttccaattgatgacactattgagggtgtcgctggcaatttg
tttgatgcatatttgaaagcatatttcttggaaagttaccggcctgtaaggaagggtgac
ctttttctagtcaggggtggtatgcgaagtgttgaattcaaagtgattgagacagatcct
ggtgaatattgtgttgttgcaccagacactgaaatcttctgtgaaggagagcctatcaag
cgtgaggatgaagagagattgaatgaagtgggctatgacgatgttggtggtgtcaggaag
caaatggctcaaattcgtgaacttgtagaacttcctcttagacacccacagcttttcaaa
tcaattggtgtgaagcctccaaaaggtattttactatatgggcctcctgggtctgggaaa
actctgattgcaagagctgtggcaaatgagacaggtgcattcttctttttaattaatggc
cctgagataatgtcaaagttggctggtgagagtgagggcaacttgagaaaggcatttgag
gaagctgaaaagaatgctccatccataatctttatagatgagattgattctattgctcca
aagagggagaagactcatggtgaggtggagaggcgtatagtttcacaacttttaacgtta
atggatggccttaagagccgggcccatgtgattgttatgggagcaactaataggcccaac
agcattgatccagctttgaggagatttgggagattcgatagagagattgacattggagtg
ccagatgaagttgggcgtttggaagtccttagaatccacacaaaaaatatgaaacttgct
gaagatgttaatcttgaacgagttgcaaaagatacccatggttatgttggtgcagatctt
gctgctctctgcactgaggctgctcttcagtgtattagggagaaaatggacggcattgac
ttggaggatgatactattgatgttgaggtgttaaattcaatggctgtgaccaatgaacac
ttccagactgctttgggatcttcaaatccatcagccttaagagaaacagttgtagaggtt
cctaatgtttcatgggatgacattggtggattggaaaatgttaaaaaagagcttcaagag
actgtccaatatcctgtggaacatcctgacaagtttgagaaatttggcatgtcaccttct
aaaggtgttctcttttatgggccacctggctgtggtaaaactttacttgcaaaagcaatc
gctaatgaatgccaagccaacttcataagcgttaaaggtccagagctgctgactatgtgg
ttcggagaaagtgaagcaaatgtgcgagaaatatttgacaaagcacgacagtctgctccg
tgtgtacttttttttgacgaacttgattccattgcaacccagcgtggcagctctgttggt
gatgctgggggtgctgcagatagagtcttgaaccaacttctgacagaaatggatggcatg
acagctaagaagacggtctttatcattggcgcgacaaacagacctgatatcattgatcca
gcattgcttaggcctggtcgtttggaccaactgatttatatccctctaccagatgaagcc
tcccgctttcagatatttaaagcatgtttacgcaagtcacctgtctctaggaatgttgac
ctggcggctctggcacgatacactcatggtttcagcggcgctgatataactgaaatttgc
cagcgggcttgcaaatatgctattagagaaaatattgagaaggatattgagagggacaaa
agaaaccaagagaaccctgaggccatggaagaagatggtgttgatgttgtctccgagata
aaggctgctcattttgaggaatcgatgaaatatgcccgccgaagtgttagtgatgcagac
atcaggaagtaccagctctttgctcagactctacagcaatctcgtggatttgggactgaa
tttaggttttcagaccgtactgagactgctgaagctggaggagcttcagatccgtttgct
tcagcaaccactgctggggatgatgatgatttgtatagctaa

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