Manihot esculenta (cassava): 110616858
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Entry
110616858 CDS
T05761
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110616858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110616858
03009 Ribosome biogenesis [BR:
mesc03009
]
110616858
04131 Membrane trafficking [BR:
mesc04131
]
110616858
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mesc04147
]
110616858
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
110616858
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
110616858
Membrane trafficking [BR:
mesc04131
]
SNARE
SNARE associated proteins
Others
110616858
Autophagy
Aggrephagy
Other aggrephagy associated proteins
110616858
Exosome [BR:
mesc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110616858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_5
AAA_33
AAA_14
AAA_22
TIP49
NPHP3_N
RNA_helicase
AAA_17
AAA_28
Mg_chelatase
nSTAND3
AAA_18
IstB_IS21
Parvo_NS1
ATPase_2
ABC_tran
Viral_helicase1
AAA_7
NACHT
NB-ARC
DUF815
TsaE
Sigma54_activat
AAA_24
ResIII
AAA_lid_PRS2_C
Zeta_toxin
Vps4_C
RCF1-5-like_lid
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
110616858
NCBI-ProteinID:
XP_021615053
LinkDB
All DBs
Position
6:23992953..23996977
Genome browser
AA seq
813 aa
AA seq
DB search
MAYSSFSQPSSSSGPKSGKRDYSTAMSERKMSPNRLVVDEAINDDNSMVSMHPATMKKLQ
FFRGDTVLIKGKKRRDTVCIVLADEQCEESKIRINKVVRANLRLHIGDVVSVHQCPDVKY
GKRVHILPIDDTIEGVAGNLFDAYLKAYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDP
GEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK
SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFE
EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN
SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLERVAKDTHGYVGADL
AALCTEAALQCIREKMDGIDLEDDTIDVEVLNSMAVTNEHFQTALGSSNPSALRETVVEV
PNVSWDDIGGLENVKKELQETVQYPVEHPDKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI
ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG
DAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEA
SRFQIFKACLRKSPVSRNVDLAALARYTHGFSGADITEICQRACKYAIRENIEKDIERDK
RNQENPEAMEEDGVDVVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGTE
FRFSDRTETAEAGGASDPFASATTAGDDDDLYS
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggcgtattcaagctttagccagccatcctcttcctctggcccgaaaagtggtaagagg
gattattcaactgcaatgtcggagcgaaagatgtctcccaaccgtcttgttgttgatgag
gccattaatgatgacaattctatggtctctatgcatccagctaccatgaaaaagcttcaa
ttttttcgaggagacactgtgctaattaagggaaaaaagagaagagacacggtttgcatt
gttctggctgatgaacaatgtgaagaatcgaaaatcagaataaacaaagttgtcagagcc
aatcttagattacacattggagacgtagtgtctgttcatcagtgtccggacgtgaagtat
gggaagcgggttcacatccttccaattgatgacactattgagggtgtcgctggcaatttg
tttgatgcatatttgaaagcatatttcttggaaagttaccggcctgtaaggaagggtgac
ctttttctagtcaggggtggtatgcgaagtgttgaattcaaagtgattgagacagatcct
ggtgaatattgtgttgttgcaccagacactgaaatcttctgtgaaggagagcctatcaag
cgtgaggatgaagagagattgaatgaagtgggctatgacgatgttggtggtgtcaggaag
caaatggctcaaattcgtgaacttgtagaacttcctcttagacacccacagcttttcaaa
tcaattggtgtgaagcctccaaaaggtattttactatatgggcctcctgggtctgggaaa
actctgattgcaagagctgtggcaaatgagacaggtgcattcttctttttaattaatggc
cctgagataatgtcaaagttggctggtgagagtgagggcaacttgagaaaggcatttgag
gaagctgaaaagaatgctccatccataatctttatagatgagattgattctattgctcca
aagagggagaagactcatggtgaggtggagaggcgtatagtttcacaacttttaacgtta
atggatggccttaagagccgggcccatgtgattgttatgggagcaactaataggcccaac
agcattgatccagctttgaggagatttgggagattcgatagagagattgacattggagtg
ccagatgaagttgggcgtttggaagtccttagaatccacacaaaaaatatgaaacttgct
gaagatgttaatcttgaacgagttgcaaaagatacccatggttatgttggtgcagatctt
gctgctctctgcactgaggctgctcttcagtgtattagggagaaaatggacggcattgac
ttggaggatgatactattgatgttgaggtgttaaattcaatggctgtgaccaatgaacac
ttccagactgctttgggatcttcaaatccatcagccttaagagaaacagttgtagaggtt
cctaatgtttcatgggatgacattggtggattggaaaatgttaaaaaagagcttcaagag
actgtccaatatcctgtggaacatcctgacaagtttgagaaatttggcatgtcaccttct
aaaggtgttctcttttatgggccacctggctgtggtaaaactttacttgcaaaagcaatc
gctaatgaatgccaagccaacttcataagcgttaaaggtccagagctgctgactatgtgg
ttcggagaaagtgaagcaaatgtgcgagaaatatttgacaaagcacgacagtctgctccg
tgtgtacttttttttgacgaacttgattccattgcaacccagcgtggcagctctgttggt
gatgctgggggtgctgcagatagagtcttgaaccaacttctgacagaaatggatggcatg
acagctaagaagacggtctttatcattggcgcgacaaacagacctgatatcattgatcca
gcattgcttaggcctggtcgtttggaccaactgatttatatccctctaccagatgaagcc
tcccgctttcagatatttaaagcatgtttacgcaagtcacctgtctctaggaatgttgac
ctggcggctctggcacgatacactcatggtttcagcggcgctgatataactgaaatttgc
cagcgggcttgcaaatatgctattagagaaaatattgagaaggatattgagagggacaaa
agaaaccaagagaaccctgaggccatggaagaagatggtgttgatgttgtctccgagata
aaggctgctcattttgaggaatcgatgaaatatgcccgccgaagtgttagtgatgcagac
atcaggaagtaccagctctttgctcagactctacagcaatctcgtggatttgggactgaa
tttaggttttcagaccgtactgagactgctgaagctggaggagcttcagatccgtttgct
tcagcaaccactgctggggatgatgatgatttgtatagctaa
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