Manihot esculenta (cassava): 110616974
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Entry
110616974 CDS
T05761
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03030
DNA replication
mesc03420
Nucleotide excision repair
mesc03430
Mismatch repair
mesc03440
Homologous recombination
mesc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110616974
03420 Nucleotide excision repair
110616974
03430 Mismatch repair
110616974
03440 Homologous recombination
110616974
03460 Fanconi anemia pathway
110616974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110616974
03032 DNA replication proteins [BR:
mesc03032
]
110616974
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110616974
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110616974
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
110616974
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
110616974
MMR (mismatch excision repair)
110616974
DSBR (double strand breaks repair)
HR (homologous recombination)
110616974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
110616974
NCBI-ProteinID:
XP_021615216
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Position
6:complement(21958117..21961855)
Genome browser
AA seq
624 aa
AA seq
DB search
MGQWVSPDAIATLLSNPKPDSLTDIPEIIVQITKLEPKGKSYGFDANDGKMKIKAIFNSR
LSSEIISGNIQNLGLIRILDYTVNEIPSKSENYLIITKCEVVSPALDLEIKDEVKKEEAG
IILKPKHEHEIKSEVKKETGGILLKPKQEMVAKSAAQIVHEQHRNMAPTARMAMTRRVHP
LVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKF
YDKFQLGKVYYISKGTLRVANKQFRTVQNDYEMTLNENSEVEEASNEAAFIPETKFNFVP
IDQLGPYVNSAELVDVVGVVQSVSPTMSIRRKSNNEIVPKRDITIADETKKTVVVSLWND
LATDVGQELLEIADKSPVVAIKSLKVGDFQGVSLSTLGRSIVQINPDIAESKKLRCWYDS
EGKETSMASVGLGLSPSTKSGARSMYSDRVSISHITSNPSLGGDKPAFFSIRAYISFIKP
DQSMWYRACKTCNKKVTGGVEGGYWCEGCQKNDPECSLRYIMVVKVSDASGEGWVSAFNL
ESEKIIGCSADELDKLKSEEGGSEYQMKLKKATWNPHLFRVSVAQHEYNNEKRQRVTVRA
VAPVDFAAESRYLLEEISKMKGSQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaatgggtgagtccagatgctatagccaccttgctttcaaaccccaaaccagat
tctctcactgatatccctgagatcatcgtccagatcaccaagcttgagcctaaagggaag
tcttatgggttcgatgctaatgatgggaagatgaagataaaagcaattttcaattcccgt
ctgtcttcagagatcatctctggaaacattcaaaacttgggtctcattcgtattcttgat
tatacagtcaacgaaattcccagcaaatcagagaattatttgatcataacaaaatgtgaa
gtggtttctcctgcacttgatttggagatcaaagatgaggtaaaaaaggaagaagcgggc
ataatcttaaagccaaagcacgaacacgagatcaagagtgaagttaaaaaggaaacaggc
ggcattcttttgaagccaaagcaagaaatggttgcaaaatcagccgctcaaatagtacat
gaacagcatagaaacatggctcctacagctcgcatggccatgacaagaagagttcacccc
cttgtttccttgaatccttaccaagggaattggaccatcaaggtccgagtcacaagcaaa
ggaaacatgcgtacttacaagaatgcaagaggagaagggtgcgtcttcaatgtggagttg
acagatgaagatggtacacagatacaagcgacaatgttcaatgaggctgcaaggaaattt
tatgacaagtttcagttgggcaaggtttattacatatcaaagggaactcttagagttgct
aataagcagtttaggacagtgcaaaatgattatgaaatgactttaaatgagaattctgaa
gtagaagaagccagtaatgaagcagcttttatccctgaaacaaagttcaattttgttcca
attgatcaattgggtccatatgttaattcagctgagcttgttgatgttgttggagtcgtt
caaagtgtttctccaacaatgagcatccgaagaaagagtaacaatgagattgtcccaaag
cgtgacatcactattgcagatgagacgaagaagacagtcgttgtctcactatggaatgac
cttgcaactgatgtggggcaggaattacttgagattgctgataagtcgcctgtagttgca
attaaatctcttaaagttggagattttcaaggtgtgtctctgtctacattgggtagaagt
attgtacagattaatccagatattgctgagtcgaagaaactgagatgctggtatgattct
gaaggtaaagagacttcgatggcatcagtaggcttgggtttaagcccttcaaccaagagt
ggagcaaggtctatgtactctgaccgagtctccatctcccatataacaagcaatccgtca
ctgggtggagataagcctgcatttttcagcattagagcatatataagtttcatcaagcct
gaccagagcatgtggtaccgggcttgtaagacttgcaataagaaggtcactggaggtgtt
gaaggtggatattggtgtgaaggatgccagaagaacgatccagagtgtagtttaaggtat
attatggtggttaaagtttcagacgcgagtggtgaaggttgggtttctgcattcaactta
gaatcagagaagatcattggttgttctgctgatgaacttgataaactgaaatccgaggaa
ggaggaagtgaataccaaatgaagttaaaaaaagccacttggaatcctcatctcttcaga
gtcagtgttgctcagcatgagtacaataatgaaaaaaggcaaagagtaacagttagggct
gttgctccagttgattttgctgctgaatctcgatatttgctagaggagatctcaaagatg
aaaggttctcaatag
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