Manihot esculenta (cassava): 110617030
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Entry
110617030 CDS
T05761
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110617030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110617030
03036 Chromosome and associated proteins [BR:
mesc03036
]
110617030
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110617030
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110617030
PBAF complex
110617030
GBAF(ncBAF) complex
110617030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
PspB
Motif
Other DBs
NCBI-GeneID:
110617030
NCBI-ProteinID:
XP_021615306
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Position
6:complement(25284023..25288444)
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AA seq
571 aa
AA seq
DB search
MEAKHHDSDPRPTRPSEQELDLYTIPSYSSWFAWDDIHETERAGLRDFFDGSSITRTPKI
YKEYRDFIINKYREDPSRRLTFTEVRKSLVGDVTLLHKVFQFLDKWGLINFSANSTGDDD
LEREETGKFRVEDGPPNGVRVVAMPNSLKPLSVPQSATGNEDIVEHALKLPPLTSYSNVF
GELGKQKELLCGNCGETCDSGLYEYIKGHYVLCGKCFKDGRYRENKSKDDFKLNDNVDSS
STNEAVWTEAETLLLLESVLKHGDDWDLVAQDVQTKTKLDCITKLIELPFGDLMLSSAHR
NGNVNGLFGSVNNSKQVPLSSSENQDAIKNEDLVHEQTNMNEQNGDAVDEGPPMKRKRTT
LLSDAGSSLMKQVALISTITGPDIAAAAAEAAVAALCDETSCPKEIFDGKDTFPTNGLWS
PTVHSKPERPHHVEDSEIKESSTQSGFSFSETQETYTGQNDIPLTLRLRTAVATALGAAA
AHAKLLADKEDREIENLVTTIIETQLKKLHYKIKRFDNLELIMEEEYAELEDLKESLIEE
RIDVLQRAITAGMPKWRDQTSVKSFLSDSLL
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaaagcatcacgactcggatcctagaccgacccggccaagcgaacaagagctc
gatctctacaccatccctagctactcgagctggtttgcgtgggacgatatccacgaaact
gaaagagctgggctgagagacttcttcgatggaagctcaatcacaagaactccaaaaatc
tataaagaatatagggactttatcatcaacaagtaccgtgaagatccatctagaaggctt
actttcacggaggttcgcaagtctcttgttggcgacgttactttgctccataaggtgttc
caattcttggacaagtgggggttgataaatttcagtgcgaattcgactggcgacgatgat
ttagagagggaggaaacgggtaagtttagggttgaggacgggcctccgaatggcgttcgg
gtcgtggctatgccgaattctcttaagccactttcggtaccgcaaagtgcgactggtaat
gaggatattgttgagcatgcattgaaattgccgcctttgacttcctattcgaatgttttt
ggtgagctggggaagcaaaaggagcttctatgtgggaattgtggtgaaacttgtgattca
gggttgtatgagtatattaagggccattatgtactttgtgggaaatgcttcaaagatgga
aggtacagagaaaacaagtccaaggatgatttcaagttgaatgacaatgttgatagcagc
agcacaaatgaagctgtttggactgaggcagagactttacttcttttagaatccgttctg
aaacatggggatgactgggatcttgtcgctcaagatgttcaaaccaagactaaacttgat
tgcattactaaactaattgagctgccatttggggatctcatgctgagttctgcacataga
aatggtaatgtgaatggactatttgggagcgtaaacaactcaaaacaagttccattatct
tcatctgaaaatcaagacgcaataaagaatgaggatttagtgcatgagcagacaaatatg
aatgaacagaatggagatgctgtggatgaaggtcctccaatgaaaagaaaacgaaccact
ttgctttcagatgctggtagttctttgatgaaacaggtagctcttatctcaaccataact
gggcccgatattgcagctgctgcagctgaggctgctgttgcagcactttgtgatgaaacc
tcatgtccaaaggagatttttgatggcaaggatacttttccaactaatggattatggtct
cccactgttcattccaagccagaaagacctcaccacgtcgaagactcagagataaaggag
agctccactcaatcaggtttttctttttcagaaactcaggagacatatacaggacagaat
gatatacctttaactttgcgacttagaactgcagttgcaacagctctaggggcagctgca
gctcatgccaaactattggctgataaggaagaccgagaaattgaaaatttggtgacaacc
ataattgaaacacagttgaagaaattgcattacaaaatcaagcgttttgacaatttggag
ctcataatggaggaggaatatgctgaattggaggatttgaaggagtcattgattgaggag
cggattgatgttttacagagggcaattactgctggcatgcctaaatggagggatcaaact
tctgtgaaatcttttttgagtgatagtttactttga
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