Manihot esculenta (cassava): 110617067
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Entry
110617067 CDS
T05761
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110617067
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Meiosis-specific proteins
Others
110617067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4059
Motif
Other DBs
NCBI-GeneID:
110617067
NCBI-ProteinID:
XP_021615356
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All DBs
Position
6:complement(27335136..27342598)
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AA seq
1336 aa
AA seq
DB search
MRTRFLNTDYFTSYPSPEETLSFLKLPIPHLPPRLLSFEEDFSRFDSQANISLEVERLPI
DSALSKFISQVIPEIIDVDYEDFEDHQFRNAKLCADEQRKFSWGSDEIRYSEKEAKPLFE
DTKEGIEKAYGHESLEKDGEITVYEKHMQRLEVIQFEAPELDEFSENVCGFEESMRILSG
VPELVNGSDIFKPGVKLLYSEKTKESVYSVEDVTLDHDMDIKACVLEADDSGSEHMNFHY
YVFPFLEVDEISLRTFTNLSMEDELLSFLENTTTQWSPNDDVLGDGMELFASKPYDVLEL
FSNHCLTEQRLETELESIDKILVMDIISMIEKGDPALPTSPLVFQEFEFLEVDSSEIYEV
FFKMQTTEEPETSEWMFRADKNFKNFNELIVSCELALVDDTFKSMPIPVHSDHHKVRSLH
AIVDEILAELKPKHLSASDGIYLDWHLLEEDKCNSKILSLYQNVLESDLHNIDFDRGSFD
KGKWVMDFVLSNDALDGPKVEEFKESPVIFSEGISSDQLLGVPTSKLLDDGCSKSGNGEH
LRQENSAKVILFESMSKFNDLEFFLNPGKVTGDDISESAVKAHGTNATFPKEGESQSALH
VEKNTDDQKLKEVLNVFPTEIKQHATASDKVEPTPIEVPEVSCSMKSEQTQACMIPFPDT
IVVVNTQNFDKEMIISRRSTYQKILAMEKEGLQVVERDIDLPVDVVIISAICLVWYHCRN
IRKKATTADEASSGLPFCIENIATNVLPLLSFTFSCCILLFEGEINFLSSVMESSDGLYA
TAASLGIDLQLFCSYSSELTDEIILSNILYAAKLCRGIFPKMPESETLAESFLTKFPSIN
PLTAHAILSSGSKLIEFLEWSNERRILALQHYHVPEESIVLFSAFCSYGEREDSKSIMTD
CSSSVSSGPDSNKCHFNVASEKKPKKCIRSPSKIGMHMNDAWQFEPLNHFPDDVQGPPGV
LKGDDCWMLRDTEILDDLQWPRPSLKDMFGQNQGMDIAQTVDYSTISKPRDSHNSKVPVI
LDEVENPGLYLNDKFWGQDEGSEMVINNKLDWKNTSQSENPHEDFLGEVINLTDIIGKDV
PSITNSMYFSTWLPETEQDSTRKSAARRLLFGKNNCPTFPSAAAINSVSDLFSSVKDHRK
SSQKNNSYAENDMPLKRTKKQLEDILMQGSVRNTKELAFKEEVSHYGGTPLSKAIHSAHP
QPGSPWTIEFLNRVREKSRMRQQSFPCDTSTPDFGCSGGISKVTKRKSPSILEFFKYKGG
SNPEKLHNQKKQKQYKQFPSSSNCGRYSASFLPTRTPADKRSRQTLSFAMNESGSQTRLV
WSDGSAHRQSKKSRKQ
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgatttctcaacacagactacttcacctcttatccctctccagaagaaacc
ctaagcttcctcaagctcccaattcctcacctccctcctcgtctcctgagcttcgaagaa
gatttctctcgcttcgattcccaagcaaatatctctcttgaggtggagaggttgccgatt
gattcagctctctctaagtttatctcacaagtgatacctgaaataattgatgttgactat
gaagatttcgaggatcatcagtttcgtaatgcaaagctctgcgccgatgagcagcggaag
tttagctggggaagtgacgagatccgatactccgagaaagaagccaagcctctttttgaa
gatacaaaagaggggattgaaaaagcatatggacatgaatctctggagaaagatggtgag
attacagtatacgagaagcatatgcagaggcttgaagtcatccaatttgaagcaccagaa
ctcgatgaattctcggaaaatgtttgcggttttgaggagagcatgcgaattctttctgga
gttccagagttagtgaacggttcggatattttcaagccaggggttaaattgctgtactct
gagaagacaaaagaatcagtttattcagttgaagatgttactttagatcatgacatggat
ataaaagcttgtgtattggaagctgatgattccggtagtgaacatatgaacttccattat
tacgtgtttccttttttggaagttgatgagataagtctgaggaccttcacaaacctgtcc
atggaagatgaactattgtcatttcttgaaaatacaaccactcaatggagtccaaacgat
gacgtccttggagatggaatggagctatttgcatcaaagccatatgatgttctggagttg
ttttcaaaccattgtctaacagagcagcgtcttgaaactgagctggaatccatagataaa
atcctggtgatggatattataagcatgatcgaaaaaggggaccctgctttaccaacaagc
ccacttgtttttcaggaatttgaattccttgaagtggactcatctgaaatttatgaagtc
ttcttcaagatgcaaacaactgaggagccagaaacaagtgagtggatgttcagagcagac
aagaactttaagaatttcaatgaattgattgttagttgtgagcttgctctggtggatgac
acttttaagtcaatgcctatacctgttcattctgaccatcacaaggtaaggtcattgcac
gccattgttgatgaaatactagctgaattaaagccaaaacacctttcagcatccgatggg
atatacttggattggcacctcctggaagaagataaatgcaacagtaagatattatcctta
tatcagaatgtattggagtcggatttgcacaacattgattttgatcggggctcttttgac
aagggaaagtgggtgatggattttgtcttatctaacgatgctttggatgggccaaaagtg
gaagagtttaaggaatcaccggttatcttttctgaaggcatttccagtgatcaacttttg
ggagttcctacaagtaaattgttggacgatggatgctcaaaatctggaaatggggagcat
ttacgtcaagaaaattctgcgaaggtgatcttatttgaatctatgtcaaaattcaacgat
cttgaatttttcttgaatcctgggaaggtcactggtgatgacataagtgaatctgctgtc
aaggcgcatggtactaatgctacatttcccaaggaaggagagtctcagtctgcccttcac
gtggaaaaaaatacggatgaccagaaattgaaagaagtgctcaatgtttttcctactgag
atcaagcaacatgcaacagcttcggataaagtagagcctacgcctatagaggttcctgaa
gtgtcctgttcaatgaaatcagagcagactcaagcatgcatgattcctttccctgacacc
atagttgttgtgaatactcaaaattttgacaaggaaatgataatatccagaagaagcacg
taccaaaaaattcttgcaatggagaaagagggattacaagtcgtggaacgtgatatcgat
ctgcctgtggatgttgtgattatttcggccatttgcttggtgtggtaccattgcagaaac
attagaaagaaagcaactactgcagatgaagcttcttcaggcttgccattttgcattgag
aatattgctacaaatgttttgccattgctgagtttcactttcagctgctgcattctgctg
tttgagggagagatcaacttcctttcctctgtaatggaatcctcagatggactctatgca
acagcagcaagcctgggaatcgatttacagcttttctgttcctattcatccgagttgact
gatgaaatcatattaagcaatatcttgtatgctgctaagttgtgtaggggcatatttcct
aaaatgcctgaatcagaaactcttgcagaatcgttccttaccaaatttccttcgataaat
ccattgacagctcatgcaatactctcttctggaagcaagctaatcgagtttcttgagtgg
tcaaatgaacgcaggattcttgcactccaacattatcatgttcctgaagaaagtattgtc
ctatttagtgctttttgcagctatggcgaacgggaggattctaaatctataatgaccgac
tgttcttcttctgtatcctcgggtcctgactccaataaatgtcattttaatgtggcttct
gaaaaaaaaccaaaaaaatgcatacgtagcccctcgaaaattggaatgcatatgaacgat
gcatggcagtttgaacctttaaaccatttccctgatgacgtgcagggtcctcctggagtg
ttaaagggagatgattgctggatgttgagagatactgagatacttgatgatttgcaatgg
ccgcggccatctttgaaagatatgtttggtcaaaaccagggaatggatattgcacagaca
gtggattattctactatctccaagccacgtgattcccataactcaaaggttcctgtaata
ttagatgaagttgaaaatccagggttatatttgaatgataaattttggggtcaagatgaa
ggatcagaaatggtaatcaataacaagttggactggaaaaatacaagccaatctgagaat
ccgcatgaggactttctaggtgaagtaattaacctcactgatataatcggtaaggatgtt
ccttctatcactaactcgatgtatttctcaacttggctgccagaaacagaacaagactcc
acaagaaagtcggccgcaagaagattgttatttggtaaaaacaattgccctacttttcct
tcggctgctgcaattaactctgtttcagatttattctcctccgtaaaagatcacagaaag
agttcacaaaaaaacaatagttatgctgaaaatgacatgcctttaaaacgcaccaaaaag
caattagaagatatattaatgcaaggatctgtaagaaacaccaaagagctggcgttcaaa
gaggaggtatcacattatggtggaacacctctctctaaagcaattcattctgcccatcca
caaccaggttcgccctggacaatagagtttcttaatagagtccgggaaaagagtagaatg
cggcagcagtcttttccatgtgatacatcaacccccgattttggatgttcgggcggtatt
tctaaagtgactaagagaaaaagtccatccattcttgagtttttcaagtacaaagggggc
agtaatcctgagaaattacacaatcaaaagaagcagaagcagtataaacaattcccaagc
tcatccaattgtggaagatattcagcttctttccttccgacaaggacacccgctgataag
agatcaagacagactctatcttttgcaatgaatgaaagcggaagccaaactaggcttgtc
tggagcgatggaagtgcacaccgacaaagcaaaaagtcgcggaagcaataa
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