Manihot esculenta (cassava): 110617207
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Entry
110617207 CDS
T05761
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110617207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110617207
Spliceosome [BR:
mesc03041
]
Complex B
Other components
Prp19-related factors
110617207
Complex C
110617207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
zf-CCCH_4
zf-CCCH_PARP12
RRM_occluded
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
110617207
NCBI-ProteinID:
XP_021615581
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All DBs
Position
1:complement(34884096..34888595)
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AA seq
492 aa
AA seq
DB search
MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRAEFDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGMNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARIT
EQDLRDNFYAHGEIESIKMVSQRAIAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKPESEASEEARQQAAMAHGGMLPRAVISQQQNQLHPPGSQVQPPPMHYFNIPPPPP
QQERTFYPSMDPQRMGAVVPSQDGAPSGPMGSGENKNALERQQGQHFPYQGMPPPQGQYH
QQLYPPYGYMPPIPPYQQYPPSYHSGVPPPQAPQGTQQHQHSVMLPRTAAPSASTSTGPP
PPGSGASTSSNT
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcacacagattgttaagagaccttgaggcagatggttgggagcgctctgactttcct
atcatctgtgagtcttgccttggtgacaatccatatgttcgaatgactagagctgaattt
gataaggaatgcaagatatgtacccgaccttttacagtttttaggtggaggcctggtcgg
gatgcaagatttaagaagtctgagatttgccaaacatgcagtaagttgaaaaatgtttgt
caagtttgtcttttggatctagagtatgggttgccagttcaggttcgagacactgctctc
agtatcaattctaatgatgccattccaaagagtgatgtcaacagggaatactttgccgag
gagcatgaccgcagggcaagagctggtatagattatgaatcttcatatggaaaggcgcgg
ccaaatgacactattctgaaacttcaaagaacaacgccatattacaaaaggaatcgagca
catgtttgcagtttttatgtaaggggtgaatgcacacgaggtgctgagtgcccttatagg
catgagatgcccataactggggagttgtcccagcaaaatattaaagatcgttactatggg
atgaatgacccagtggcattgaagctgcttaacaaggctggtgaaatgccctcattggag
ccacctgaagatgaaagcattagaactctttatgtgggtggacttgatgctaggattacg
gagcaggatttgagagataacttttatgctcatggggagatagaatctatcaagatggtg
tctcaacgagcaattgccttcgtaacttacacaaccagagagggcgcagagaaggctgca
gaagagctgtctaataagctagttatcaagggcctgaggctgaagctaatgtggggaaga
ccccaagctccaaaacctgagtctgaggcttcagaagaagcaaggcaacaggcagcaatg
gctcatggtgggatgttgcctcgggcagttatatcccagcagcagaatcaattgcaccca
cctgggagtcaagtccaacctccaccaatgcactacttcaatattccaccaccaccacct
cagcaggaaagaaccttttatccatcaatggatcctcaaagaatgggtgccgttgttcca
tcccaagatggggctcctagtgggccaatgggatctggggagaacaaaaatgcactggag
aggcagcaagggcagcactttccttatcaggggatgccaccaccacaggggcaatatcac
caacaactttatcctccatatggatacatgcctccaatacccccttatcagcagtaccct
ccatcatatcactctggggttcccccaccacaggctccacaaggcacccagcagcaccag
cattctgtcatgctgccaaggactgctgcaccttcagcatctacaagcactggacctcca
cctccaggttctggagcatcaacttcatcaaatacatga
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