Manihot esculenta (cassava): 110617242
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Entry
110617242 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110617242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110617242
03009 Ribosome biogenesis [BR:
mesc03009
]
110617242
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110617242
Spliceosome [BR:
mesc03041
]
Complex A
U1 snRNP components
U1 related factors
110617242
Complex B
110617242
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Helicases
110617242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110617242
NCBI-ProteinID:
XP_021615597
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All DBs
Position
6:complement(24129323..24134056)
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AA seq
632 aa
AA seq
DB search
MVNPYDHRYSDPDSYRHRRSDLMGPPPVGPAMMGGPYGRGGPAPYGGPPPSFAGRGGPGA
VGGYPHFEPPVGRFDIGRGGGTVSGGRGFSGNRLPNGHIGDRRPGAARFGGGRGRDGGRG
GGRGGGRGVGGGRGFDGGRGGGRGGRHVGVATRGDLDNISLPKQDFGNLVPFEKNFYIES
PSIQSMSENEALMYRARRDITVEGHDVPKPIRMFQEANFPDYCLEVIAKLGFVEPTPIQA
QGWPMALKGRDLVGIAETGSGKTLAYLLPALVHVSAQPRLVQGEGPIVLVLAPTRELAVQ
IQEEAMKFGSHANIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLRRV
TYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII
GSPYLKANQSINQVVEVMTEVEKYNRLIKLLKEVMDGSRILIFMETKKGCDQVTRQLRMD
GWPALSIHGDKNQAERDWVLSEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLED
YVHRIGRTGRAGARGNAFTFFTHANAKFARDLIKILQEARQIISPALSALARSGGAPGGS
GGNFRSRGRGGFGNRSLISGSNTIPLGSKRPW
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggtgaacccttatgaccacagatattccgatcccgattcttaccgtcaccgtcgcagt
gatctgatggggcctccaccggtcggaccggcaatgatggggggaccttatgggcgcggt
ggaccagcgccttatggtggtcctccgccatcttttgcgggacgaggtggtcctggagcg
gtaggtggttatccacatttcgagcctcctgttggtagattcgatatcggtcgaggtggt
ggcactgtcagtggagggaggggcttcagtggtaaccgtctgcccaatggtcatattggg
gatagaaggcctggtgcagctcgttttggcggtggacggggccgtgatggtggacgaggc
ggcggacgtggtggtgggcgcggtgttggtggaggaaggggatttgatggtggtcgtggt
ggtggaagaggaggtaggcacgttggggtagcgactagaggagacttggataatatttcc
cttcccaagcaggattttgggaatttggtgccttttgagaagaatttctacattgaaagc
ccttcaattcagtctatgtctgaaaatgaagctttgatgtatcgagcaagaagggatatt
actgttgaagggcatgatgttcctaaacccattcggatgtttcaagaggctaatttccct
gattattgcttagaggtgattgcgaagttgggttttgttgagccaacaccaatccaggca
caagggtggcctatggccctcaagggtagagatttagttggcattgcagagactggttct
ggtaagactttggcgtacctgctaccagctttggtgcatgttagtgcacaacctcgatta
gtacaaggtgagggtccaatcgtgttagtgttagctcctacaagagaattagctgttcaa
atccaagaagaagctatgaagtttggttcccatgctaatattaggagtacttgcatatat
ggtggtgctcccaaaggacctcaaattcgtgatcttcaaagaggtgttgagattgtgatt
gctactcctggacgattaattgatatgttagaagctcaacacacaaacctgcgaagagtc
acctaccttgtgttggatgaggctgataggatgctggacatgggatttgagcctcagatt
aggaagattgtatctcaaattcgacctgatagacagactttatattggagtgccacatgg
ccaagggaggttgagactctagcaaggcagtttctgcgcaatccatacaaggtaatcatt
ggctcaccatatctgaaagcaaatcaatcaatcaaccaagttgttgaagttatgacagag
gtggagaagtacaacaggctgatcaaacttctaaaagaagtgatggatgggagtcgaatt
ttaatattcatggagaccaagaaaggctgtgaccaagttacgaggcagttgagaatggat
ggatggccagcactatccatccatggtgataaaaatcaagctgaaagggattgggtctta
tctgagttcaaaagtggcagaagtcctataatgactgccactgatgttgctgcacggggt
cttgatgtgaaggacataaagtgtgtgatcaactatgattttccttccagccttgaggat
tatgtccacaggattggccgaactggtcgagcaggggctaggggaaatgcttttaccttt
ttcacccatgcaaatgcaaagtttgctcgggatcttatcaagattttacaggaagcaagg
cagatcatctctccagcattgtctgctttggctcggtcaggtggtgctccaggaggttct
gggggtaacttccgatctagaggacgaggaggctttggtaatcgctcattaatttcagga
tctaatactattcctcttggttcaaagaggccttggtaa
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