Manihot esculenta (cassava): 110617409
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Entry
110617409 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110617409
03036 Chromosome and associated proteins [BR:
mesc03036
]
110617409
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110617409
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Helicases
110617409
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
110617409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
110617409
NCBI-ProteinID:
XP_021615852
LinkDB
All DBs
Position
6:26747548..26752975
Genome browser
AA seq
698 aa
AA seq
DB search
MPSIALANKFSDSKDKKENKMKKKIALETSEPDSANPGKTKNLMAFKTEDEIFSDKKEKT
KDKKKRKAVDIHSEDEQRSETSSELVEPVNLKAKKTKKKNKKAKVAQEEDEEVQEEVPKA
KDPNAISRFRISDPLREKLKARGIESLFPIQARTFDDILDGSDLVGRARTGQGKTLAFVL
PILESLTNGPAKASRKTGYGRPPSVLVLLPTRELASQVYDDFKVYGETLGLTSCCLYGGA
SYNPQEMSLKRGVDIVVGTPGRIKDHIERGNIDLSLLKFRVLDEADEMLRMGFVEDVELI
LGKVEDVSKVQTLLFSATLPDWVKHISSRFLKPTKKTIDLVGNEKMKASTSVRHIVLPCF
TSAITQLIPDIIRCYSSGGRTIIFTEKRESANELAGLLHGARALHGEIQQSQREVTLSGF
RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP
RRSNISKIEKESGVKFEHIAAPQPADIAKAVGVEAAEKITRVSDSVIPAFKSAAEDLLNT
SGLSAVDLLAKALAKAAGYTEIKSRSLLTSMENHVTVLLEAGKPIYTPSFAFAILRRFLP
EDKMELVKGMTLTADGNGAVFDVPGPDLDIFLAGQENAANVSIQVLQALPPLQERDQSRG
RFGGGGGRFSGGRGGRGRGFSGGRNGKFSNGFGGGKKW
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgccctccatagctctggctaataaattttcagattccaaagacaagaaagagaataag
atgaagaagaaaatagctttggaaacttcagagccagactctgcaaatccgggcaagacg
aagaacttgatggcgtttaagactgaagatgaaatcttttctgacaagaaggagaagacg
aaagataagaagaaacgaaaagctgtagacattcactctgaagatgaacagaggagcgag
acgagctcggagcttgtggagccagtgaatttgaaggcaaagaaaacaaaaaagaagaat
aagaaggctaaggtcgcccaagaggaggatgaggaggtacaagaagaggtaccgaaggcc
aaggatcctaatgcgatctcgaggtttcgcatttctgatcctctgagggagaagctcaag
gccagagggatcgagtcgttgttcccaattcaggccaggaccttcgatgatattctcgac
ggctctgacttggttggtcgcgcccgaactggtcagggtaaaactctggcttttgtgtta
cctattttggagtcgctaacaaatggacctgcaaaagcatcaagaaagacagggtatggt
aggcctccaagcgttctggttcttttacccaccagggaattagccagtcaggtgtacgat
gacttcaaagtttatggtgagacactgggtttgacatcctgctgtttatatggaggagct
tcatacaatcctcaagagatgagcctaaaaagaggggtggatatagttgttggaacccca
ggccgcataaaggatcacatagagaggggcaatattgacttaagcttgctgaaattccga
gtccttgatgaggctgatgaaatgttgaggatgggctttgttgaagacgttgaacttatt
cttggaaaagttgaggatgtaagcaaagttcagactcttctcttcagtgccaccttgcca
gattgggtgaaacatatttcttctagatttcttaaaccaaccaagaaaaccatagatctt
gttggtaatgagaaaatgaaggctagtaccagtgttaggcatattgtccttccctgtttt
acttcagcgataactcagcttattcctgatattattcgttgttatagcagtggaggccgt
acaattattttcactgagaaaagggaatctgcaaatgaacttgctggtttgttacatgga
gcacgggctttacatggggagatacaacagtctcaacgcgaggtcaccctttctgggttc
aggtcgggcaaattcatgacattggtagccacaaatgtcgcagctcggggacttgatata
aatgatgtgcaattaataatccagtgtgaaccacctcgtgatgtagaagcttatatacat
cgttctggacggacaggaagagcaggcaatactggagttgctgtaatgctctatgatccg
aggaggtccaatatatcaaagattgaaaaagaatctggtgtgaaatttgagcacattgct
gcccctcagccagctgatattgccaaagctgttggtgttgaagcagcagaaaaaataact
cgagtttctgacagtgtgattcctgcattcaagtctgcagcagaggatctattaaataca
tcgggcttgtcagcagtagatttacttgcaaaagcccttgccaaggctgctggctatact
gagataaagagtagatcacttctaacatccatggaaaaccatgtcacggtgctacttgaa
gctggaaaacccatctatacaccatcatttgcttttgccatcttgaggagattcttacct
gaggataagatggagttggtgaagggtatgaccctgacagctgatgggaatggtgctgta
tttgatgtgcctggtccagatctggacatatttcttgctggccaggaaaatgcagctaat
gtcagcatacaggtgttacaagcattgccacccttgcaagaaagagaccaatcaagggga
agatttggtggtggtggtggtaggttctcagggggcagaggtggcaggggcaggggattt
tctggtggaaggaatggtaaattctctaatggctttggcggtgggaaaaaatggtga
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