Manihot esculenta (cassava): 110617650
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Entry
110617650 CDS
T05761
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
KO
K15544
RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:
3.1.3.16
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110617650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110617650
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110617650
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
110617650
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110617650
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110617650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssu72
Motif
Other DBs
NCBI-GeneID:
110617650
NCBI-ProteinID:
XP_021616278
LinkDB
All DBs
Position
6:605677..612980
Genome browser
AA seq
193 aa
AA seq
DB search
MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYRQ
MFDDLRRKDPDLYKRNGILPMLKRNSSVKLAPQRWQENAADGSFDVVFTFEEKVFDMVVE
DLHNRDQVLMKSVLVINLEVKDNHEEAAIGAQLALDLCQMIEAADSWEDSVDGIIAAFET
KHRRKLLYSISFY
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgaaattccgttatgctatggtgtgttcatcaaatcagaatcgaagcatggaggctcac
tcactgctcaagaggcaaggctttgatgtatcttcatatggaactggagctcatgtgaag
ctaccgggaccatccctcagagagccaaacgtttatgattttggaaccccttacaggcaa
atgttcgatgatctcagacggaaggaccctgacctttacaagcgtaatggcatattgccg
atgctgaaaagaaactcatctgtaaaattggcgcctcaacgttggcaagaaaatgctgct
gatggttcatttgatgtggtgttcacttttgaagaaaaggtttttgatatggttgttgag
gatctccataatcgggatcaagttcttatgaagagcgtgctggtgatcaacttggaagta
aaagataaccatgaggaggcagccatcggtgctcaactcgctttagatctgtgccaaatg
atcgaagcagccgactcatgggaggattctgttgacggcataatagctgcatttgagaca
aagcataggcggaagcttttgtatagcatctcattttattga
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