KEGG   Manihot esculenta (cassava): 110617650
Entry
110617650         CDS       T05761                                 
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110617650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110617650
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110617650
Enzymes [BR:mesc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     110617650
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     110617650
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     110617650
SSDB
Motif
Pfam: Ssu72
Other DBs
NCBI-GeneID: 110617650
NCBI-ProteinID: XP_021616278
LinkDB
Position
6:605677..612980
AA seq 193 aa
MKFRYAMVCSSNQNRSMEAHSLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYRQ
MFDDLRRKDPDLYKRNGILPMLKRNSSVKLAPQRWQENAADGSFDVVFTFEEKVFDMVVE
DLHNRDQVLMKSVLVINLEVKDNHEEAAIGAQLALDLCQMIEAADSWEDSVDGIIAAFET
KHRRKLLYSISFY
NT seq 582 nt   +upstreamnt  +downstreamnt
atgaaattccgttatgctatggtgtgttcatcaaatcagaatcgaagcatggaggctcac
tcactgctcaagaggcaaggctttgatgtatcttcatatggaactggagctcatgtgaag
ctaccgggaccatccctcagagagccaaacgtttatgattttggaaccccttacaggcaa
atgttcgatgatctcagacggaaggaccctgacctttacaagcgtaatggcatattgccg
atgctgaaaagaaactcatctgtaaaattggcgcctcaacgttggcaagaaaatgctgct
gatggttcatttgatgtggtgttcacttttgaagaaaaggtttttgatatggttgttgag
gatctccataatcgggatcaagttcttatgaagagcgtgctggtgatcaacttggaagta
aaagataaccatgaggaggcagccatcggtgctcaactcgctttagatctgtgccaaatg
atcgaagcagccgactcatgggaggattctgttgacggcataatagctgcatttgagaca
aagcataggcggaagcttttgtatagcatctcattttattga

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