Manihot esculenta (cassava): 110617732
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Entry
110617732 CDS
T05761
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase component HRD3A
KO
K14026
SEL1 protein
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110617732
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Gene cluster
GFIT
Motif
Pfam:
Sel1
TPR_7
TPR_27
Motif
Other DBs
NCBI-GeneID:
110617732
NCBI-ProteinID:
XP_021616402
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Position
6:1017571..1022919
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AA seq
683 aa
AA seq
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MRRLTSYRLALSLLILSLLPLSLLARPFVLVLSQDDIRDGSTPGDSDADSTSESPPEWDE
FGDSDSKPEHELDPGSWRPIFEPDSSAPDTTEDSMLAEYYSVVQKMMWAVSGGEVRMMEE
AAAEIEAAAVVGNPHAQSVLGFLSGLGQMKERNKAKAFLYHHFAAEGGNMQSKMALAYTY
SRQDMYDKAVKLYAELAEVAVNSFLISKDSPVIEPVRIHNGAEENKEALRKSRGEEDEDF
QILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDHAKALSWFSKAVKKGEPRSMELLGEIYA
RGAGVERNYTKALEWLTLASKQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFEKAADNE
EAGGHYNLGVMYLKGIGVKRDVKLACKYFIVAANAGQPKAFYQLAKMFHTGVGLKKDLVM
ATALYKLVAERGPWSTLSRWALESYLKGDVGKALLLYSRMAELGYEIAQSNAAWILDKFG
ERSMCMGESGFCTDAERHQRAHSFWWQASEQGNEHAALLIGDAYYYGRGTERDYERAAEA
YMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALEIDPAAKLPVTLALSSLWI
RRNYADSFLVDLIDSLPGVYPKVEEWVENVLMEEGNATILTLFACLLTVLYLRERQRRHV
AGVGGDVGVPPQQQFEHGAAVPR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcgtttaacgagttacagactcgctctctccctcctcatcctctctctcctccct
ctctctctcctcgctcggcctttcgttctcgttctctcccaagatgatatcagagatggt
tccacccccggcgactccgacgccgattcaacttccgaatctccgccggaatgggacgaa
ttcggtgactctgattcaaagccggagcacgagctcgaccctggatcctggcgcccaatc
tttgagcctgattcctctgctcctgataccacggaggactcgatgttggcggagtattac
tccgttgttcagaagatgatgtgggcggtgagcggcggggaggtgaggatgatggaggag
gctgcggcggagattgaggcggcagctgtggttgggaatccacatgcgcaatcagtgttg
ggatttctgtccgggctagggcagatgaaggagaggaataaagctaaggcgtttctttat
catcattttgcggctgaaggaggtaacatgcagtcgaagatggctctggcatacacttat
tcgcgccaagatatgtatgataaagcagttaaattatatgcggagttagctgaagtagct
gtgaacagctttttgatctcaaaggattcacctgtgattgaaccggttagaattcacaat
ggagctgaggagaacaaggaggctctgaggaagtcgcgaggggaggaagatgaagacttc
cagattttggaatatcaggcccaaaagggcaatgctggagctatgtacaaaattggactg
ttttactactttggattaagaggactgaggcgcgatcatgcaaaggcattatcatggttc
tctaaggctgtaaagaagggggaacccaggtcaatggaactccttggtgagatatatgca
agaggagccggagttgaaaggaactacactaaagcgcttgagtggcttacacttgcatca
aagcagcaactttactcagcttataatggcatggggtatttgtatgtgaaaggttatgga
gtggaaaagaagaactataccaaagcaaaagaatactttgagaaagctgctgacaatgaa
gaggctggtggacattacaatcttggagtaatgtatcttaaaggaattggggtaaagaga
gatgtgaagctggcgtgtaaatattttatagtggctgctaatgcaggtcaacctaaggca
ttttaccagcttgcaaagatgttccatacgggtgtaggacttaagaaggatctagttatg
gctactgcattatataaactggttgcagaacggggtccatggagtaccttgtccagatgg
gcattggaatcttacctaaagggtgatgtaggcaaggcattgctactgtattcaaggatg
gctgaactgggctacgagattgcccagagtaatgctgcatggattcttgataaatttggg
gagcgcagcatgtgcatgggagagtctggattttgcacagatgcagaaaggcatcagcgg
gcacattctttttggtggcaagcttctgagcagggtaatgaacatgctgctttgctgatt
ggtgatgcatattattatggtcggggtacagagagggactatgaacgagctgctgaggct
tacatgcatgccaaatctcaatctaatgcacaagccatgttcaaccttggatacatgcat
gagcatggtcaaggacttccatttgatctccatcttgctaagcgttattatgatcaagcc
ctagagatcgatccagcagcaaagttgcctgttacactggctctgtctagcttgtggata
cggaggaactatgcagacagtttcttggtcgacttaattgattcattgcctggagtctat
ccaaaagttgaagaatgggtggagaacgtattaatggaggaaggaaatgcgacaatactg
acccttttcgcctgtctccttactgtcctttatcttcgtgagagacagcgcaggcatgtt
gctggtgttggtggtgatgttggtgtaccaccgcaacagcaatttgaacatggtgctgct
gtaccccgttaa
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