Manihot esculenta (cassava): 110617908
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Entry
110617908 CDS
T05761
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110617908
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
110617908
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
110617908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
T2SSE
Helicase_PWI
Tc-R-P
Motif
Other DBs
NCBI-GeneID:
110617908
NCBI-ProteinID:
XP_043813158
LinkDB
All DBs
Position
6:22063264..22115698
Genome browser
AA seq
2101 aa
AA seq
DB search
MLMQLPRLTNSLRDPFDVDQAYLQRKIILQNRLKHRNTANSLNESELARKIVYRWEEAST
EVTQAYKQFIGGVVDLIDGEVPSEEFREVALTAYRLFGGPGPVEEDNDDSSILKRNNVEC
RSELQKLIGHAVLDANIQRVATLAQRLSSLQPTSHESALVLESHVNGSDRDLEFGADLAF
QTPARFLVDITLEDEEDAETTGPSLFQDGWHDHNDYGHNHSAADGGKFNLSWLRDACNQI
VRESTSQLSQDDLAMAICRVLDSNKPGEEIAGDLLDLVGDSAFEIVQDLISHRKELVDAI
RHGWSVLKSDMTVSSIQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEHGVDNDA
SAASFSSLLQASERKNLLDDLIGSGAGSHSLSITALPQGTIRKHYKGYEEVVIPPTPTAQ
MKPGEKLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAM
ISILHEIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTTTFSRRLSPLNMVVRELTGDMQL
SKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVART
LRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEP
NFAARNELLNEICYGKVVDSLRQGHQAMVFVHSRKDTAKTAAKLVEIARKYSDLELFKND
AHPQFSLIKKEVVKSRNKDVVELFEFAVGIHHAGMLRADRVLTEQLFSDGLLKVLVCTAT
LAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHD
KLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRQNPL
AYGIGWDEVIADPSLSLKQRSFITDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQ
YSSVETYNEMLRRHMNDSEVIDMVAHSSEFENIVLREEEQNELEMLLRMACPLEVRGGPS
NKHGKISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWSEMSLFMLE
YCKAVDRQIWPHQHPLRQFDKDLSAEILRKLEERGADLDRLQEMEEKDIGALIRYPHGGK
LVKQYLGYFPWIQLSATVSPITRTVLKVDLLITPEFTWKDRFHGASQRWWIVVEDSENDH
IYHSELFTLTKRMARADPQKLTFTVPIFEPHPPQYYIRAVSDSWLHAEALYTISFHNLAL
PEARTTHTELLDLKPLPVSSLGNVTYEALYNFSHFNPIQTQIFHVLYHTDNNVLLGAPTG
SGKTISAELAMLRLFDTQPDMKVIYIAPLKAIVRERMNDWRKRLVSQLGKEMVEMTGDYT
PDLMALLSADIIISTPEKWDGISRNWHTRSYVTKVGLMILDEIHLLGADRGPILEVIVSR
MRYISSQTERAVRFVGLSTALANAGDLSDWLGVGEMGLFNFKPSVRPVPLEVHIQGYPGK
YYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAADEHPRQFLSMP
EDALQMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWG
VNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF
YKKFLYEPFPVESSLKEHLHDHINAEIVTGTICHKEDAVHYLTWTYLFRRLMVNPAYYGL
ENAEPETLSSYMSRLVQNTFEDLEDSGCIKLNEDNVESMMLGTIASQYYLSYMTVSMFGS
NIGPDTSLEVFLHILSGASEYDELPVRHNEENYNEALSQRVRYMVNKNQLDDPHVKANLL
FQAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSLTCMRLLQMVMQGL
WFDKDSSLWMLPCMNADLLSSLSKQGISSVQHLLDLPKATLQAMIGSFPASKLYQDLHHF
PCIKTKLKLQKKDADGTKSLSLNIKLERTNSRKSSRAFIPRFPKIKDEAWWLVLGNTSTS
ELYALKRVSFSDRLVTRMDLPSSFTTVQGTKLMLISDCYLGFEKEYCIEEIVKSQEMETG
I
NT seq
6306 nt
NT seq
+upstream
nt +downstream
nt
atgttaatgcagttgcctcgcttgacaaactctctcagagatccattcgacgttgatcaa
gcctatctccagcgcaagatcatcctccagaaccgcctcaagcatcgcaatactgcaaat
tcacttaatgaatcggaacttgcaaggaagatagtctatcgatgggaagaagcatcaact
gaagtgacacaagcttacaagcagttcattgggggagtagtggacttaatagatggagag
gtaccctctgaagagttccgtgaagtggcactcactgcctaccgtctatttggtggacca
ggaccagtagaggaagataatgatgattccagtattctcaaaaggaataatgttgaatgc
aggtcagaattgcaaaaacttattggtcatgcagttctagatgctaacatccagagagtt
gccactctagcacagaggctttccagtttgcaacctaccagccatgagtctgcacttgtt
ttagaaagccatgtgaatggaagcgacagggatctcgagtttggtgctgatcttgctttc
caaactccagccagatttctagtggacattactttggaggacgaggaggatgcagaaacc
acggggccttctttgtttcaggatggatggcatgatcataatgactatggccataatcat
tctgctgctgatggtgggaaattcaatttaagttggttaagagatgcatgcaaccagata
gtaagagaaagtacttctcagctttcccaagatgatctggcgatggctatatgccgtgta
cttgattcaaataaacctggcgaggagatagccggtgacttgttggatcttgttggggat
agtgcgtttgagatcgttcaagaccttatatcacatcgaaaggaacttgttgatgcaatc
cgtcatgggtggtcagtactgaaatcagatatgacagtgtcaagcattcaatcacgtatg
cctagttatggcacccaggttactgtccaaacagaatctgaaaggcaaatcgataaactt
cggcggaaggaggagaagagacatagacgtggaacagaacatggggttgataatgatgct
tcagctgcaagtttttcttctttacttcaagccagcgagaggaaaaatcttttggatgat
ctgattggctctggcgcaggatctcattcattatcaataactgctcttcctcaaggtact
ataaggaaacattacaagggctatgaggaagttgttatccctccaacaccaactgcacaa
atgaaacctggggaaaagctgattgagataaaggagttggatgattttgctcaagctgca
tttcatggatacaaatcattgaaccgaatccagagccggatatttcaaactgtttattac
actaatgagaatatacttgtatgtgcaccaacaggagctggcaaaacaaatatagctatg
atttctattctgcatgagattggacagcacttcaaggatggttacttgcacaaagatgaa
tttaagatagtttacgttgctcctatgaaggcattagctgcggaggtcactacaacattc
agccgtcgtttatctccactgaatatggttgtgagagaacttactggggacatgcagctc
tcaaagaatgaacttgaagaaactcagatgatagtgacaacacctgagaaatgggacgtc
attactcgtaagagcagtgacatgtcactttcaatgctggtgaagctcttaattattgat
gaagtgcatcttttgaatgatgatagaggccctgtgatagaagcacttgttgccaggact
ctgcgccaggtagagtcaacacagacaatgatacgtattgtaggactttcagcgacttta
cccaattatttggaggttgctcaatttcttagagtgaacccagatacaggcctcttcttc
tttgattctagttatcgtcctgtgccccttgcacaacagtacattggaattagtgagccg
aactttgcagctcgcaatgagttattgaatgagatttgttacgggaaggttgtagattca
ttgaggcaaggccatcaggcaatggtttttgttcattcgcgaaaagatacagctaaaacg
gctgccaaattagttgagattgctcggaagtatagtgacttggagctctttaaaaatgat
gcacatccacaattttccttgattaagaaagaggttgttaagtctagaaacaaggatgtt
gttgaactgtttgaatttgctgttggcattcatcatgcggggatgttacgtgctgatagg
gttttgactgagcaacttttctctgatggactcttgaaggtgcttgtttgcacagcaact
ttggcatggggtgtgaatctgcctgctcacaccgttgtgattaaggggacccaattatat
gatcctaaggctggtgggtggcgagatctaggcatgcttgatgttatgcagatctttggg
agggctgggagacctcaatttgacaagagtggtgaaggcattataatcacatctcatgac
aaactggcctactatcttagattgctgacaagtcaactgcccattgaaagtcagtttatt
agctccttaaaagataatttaaatgcagaagtagcattgggtactgtcactaatgtcaag
gaagcctgtgcatggctagggtatacctaccttttcatcaggatgaggcagaatcccttg
gcatatggcattggatgggatgaggttattgcagatccttctttgagtttaaagcaaaga
tctttcataacagatgctgcacgtgcacttgacaaagctaaaatgatgcggtttgatgag
aaaagtggaaacttctattgtacagagcttggccgcatagcaagccacttttatatccaa
tattctagtgttgaaacttacaatgagatgttgagacgccacatgaatgatagcgaggtt
attgatatggtagcccattcttctgaatttgagaatattgttcttagagaggaggagcag
aatgagcttgagatgttgttgcgcatggcatgccctctagaagttaggggtggtccatcc
aataaacatggaaagatttcaattctcattcagttgtacatatctcgcggctcgattgat
tctttttcgttggtctctgatgctgcatatataagtgcaagcttagctcgaatcatgcgt
gcattatttgaaatttgtttacgcagaggctggagtgagatgtctttattcatgttagag
tattgcaaggctgtagatcgccagatttggcctcaccaacatccacttaggcagtttgac
aaggatctttcggccgaaattctgcggaagcttgaagagcgaggggctgatttagatcgt
ctacaggagatggaggaaaaagatattggagcacttatccgttatccccatggagggaag
ttggttaagcaatatttagggtacttcccatggatccagttatctgcaactgtaagtcca
atcaccagaactgttctgaaggtggatttgctcataacaccagaattcacatggaaagat
cgttttcatggtgcttcacaacgttggtggattgttgttgaggattctgagaatgatcac
atctaccattcagagcttttcactttgacaaagcgaatggcacgagcagatcctcagaag
ctcacattcactgtgccaatttttgaaccacatccaccacaatactacatccgtgctgtt
tctgattcatggttgcatgcagaggctctctacactatctcattccataatctagcactg
ccagaggctcgtactacacatacagaacttctagatttgaaaccactccctgtctcatca
cttggcaatgttacatatgaagctttatacaacttttctcattttaatcctatacaaacg
cagatatttcacgtcctttatcacacggacaacaatgttttgttaggagctcccactggt
agtgggaaaactatatcagctgaacttgctatgcttcgtctcttcgatactcaacctgat
atgaaggttatttacatagcacctttgaaggctattgtacgggagagaatgaacgattgg
agaaaacgccttgtctctcagcttggaaaagagatggttgagatgactggagattacaca
cctgatttgatggccctcttgtctgcggatatcattatatctacccctgagaagtgggat
ggtataagtcgtaattggcatactcgcagctatgtaacaaaggttgggcttatgattttg
gatgagattcatttgttaggtgccgatcgtggacctatccttgaggttattgtttcaagg
atgagatacatatcatcccaaacagagcgggcagtgcgattcgtaggtctttcaacagct
ttggcaaatgcaggtgacttgtctgattggttgggagttggtgaaatgggacttttcaac
ttcaagccaagtgtaaggcctgtgcctctagaagtacatatccagggatatcctggaaaa
tattactgcccaaggatgaatagcatgaacaaaccagcatatgctgcaatatgcacccat
tcgcctacaaaaccagtactcatatttgtatcatctcgtcgccagacaaggcttactgca
cttgaccttattcagtttgcagcagcagatgagcatccaaggcagtttttaagtatgcca
gaagatgcactgcagatggttctttctcaggtcactgatcagaacttgagacacacctta
cagtttggcatcgggttacaccatgcaggactaaacgacaaagatagatctctggttgag
gaactttttgcaaacaataagatacaggtgctagtatgcacgagcacacttgcttggggg
gtgaatcttcctgctcatctggtaattatcaagggtacagaatattatgatggaaaggca
aagagatacgttgattttcctatcacagatatcttgcaaatgatgggtcgtgcaggccgc
ccacaatatgatcagcatggaaaagctgttattcttgttcatgaacccaagaagagcttc
tataaaaagtttttgtacgaaccgtttcctgttgaaagtagtctaaaggagcatctgcat
gatcacatcaatgcagagatagttactggcacaatttgccataaagaggacgctgtgcat
tatcttacatggacttacttattccgcagactgatggttaatccagcctactatggtctt
gagaatgcagagcctgaaactctcagttcttacatgtccagattagtgcaaaacacattt
gaagatctggaagacagtggttgcatcaaattgaatgaagacaatgtggagtctatgatg
ttgggcacgatagcatcgcagtattaccttagctacatgactgtttcaatgtttggatca
aatatagggcctgatacatctcttgaagtttttctgcatattctatctggtgcttctgaa
tatgatgaacttcctgtgcggcataatgaggaaaattataatgaagcattgtctcagaga
gttcggtatatggtgaacaagaatcagttagatgatccgcatgtcaaagcaaatctccta
tttcaggctcatttttcccagttagagttgcccattagtgattatgtgacagatttgaaa
tcagtgttagatcaaagtatacgtatcatacaggccatgatagatatttgtgccaatagt
gggtggctctcaagctcacttacgtgcatgcgtcttttacaaatggtcatgcagggtctg
tggtttgataaagattcttccttgtggatgttgccgtgcatgaatgctgatcttttgtca
tcattaagcaaacaaggaatatccagtgtgcagcatcttttggatcttccaaaagcgact
ttgcaggccatgattggaagttttcctgcttcaaaattgtatcaggatctgcatcatttt
ccctgcattaaaacaaagttaaaacttcagaagaaggatgctgatggcacaaagtctctt
tccctgaacatcaaattggagaggacgaactccaggaaaagctcaagggcttttatccct
cgattccctaagataaaagatgaagcatggtggttagttcttggtaacacatccacctct
gaactttatgctttgaagagagtttctttctctgatcgcttggttactcgcatggattta
ccatcgtccttcaccactgtacaggggacaaaattgatgttaatttcagattgttatctt
ggttttgaaaaagaatattgcattgaagaaatagtgaagtctcaagaaatggaaacaggc
atttga
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integrated database retrieval system
