Manihot esculenta (cassava): 110618042
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Entry
110618042 CDS
T05761
Name
(RefSeq) ubiquitin receptor RAD23c isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03420
Nucleotide excision repair
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110618042
09124 Replication and repair
03420 Nucleotide excision repair
110618042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
mesc03051
]
110618042
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110618042
Proteasome [BR:
mesc03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
110618042
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
110618042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
Rad60-SLD
UBA_7
Rad60-SLD_2
UBA_RAD5A
CUE
Dsc3_N
TECR_N
UBA_3
FAM196
Ubiquitin_4
Permuted_GreAB-C
Motif
Other DBs
NCBI-GeneID:
110618042
NCBI-ProteinID:
XP_021616747
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Position
6:20572023..20576928
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AA seq
389 aa
AA seq
DB search
MKIFVKTLKGSTFDLEVKPEDTIADVKKTIETTQGADVYPAGQQMLIYQGKVLKDNTTID
ENKVAENGFVVIMLTKNKSSARDGSTASTASTTKAPQISTPPQAPVPTSSPPAPAPAPAP
APAAAAPGPASAPAPVSSANATSEADVYGQAASNLVSGSNLEGVIQQILDIGGGTWDRDT
VVRALRAAYNNPERAIEYLYSGIPEVPPVTPVPVSGQVANPPVQPPPPVQPSPVPSTGPN
ANPLDLFPQGIPNTGSGAAGVGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPH
LMRLIQEHQADFLRLINEPVEGGEGNILGQLQAAMPQAVTVTPEEREAIERLEAMGFDRA
LVLEVFFACNKNEELAANYLLDHMHEFEE
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttcgttaaaactttgaaaggctctaccttcgacctcgaagtgaaacctgaa
gacaccattgctgatgtcaaaaagactatagaaactactcaaggggcagatgtttatcct
gctggacaacagatgctcatttatcaagggaaagtccttaaagataacacaacaattgat
gaaaacaaggttgctgaaaatggttttgttgtaatcatgttaacaaagaataagagctca
gctagggatggttcaactgcatccactgcttctactactaaggcacctcagataagcacc
ccacctcaagcgcctgtaccaacctcatcaccgcctgcccctgcccctgctcctgcccct
gcccctgctgctgcagcacctggtcctgcttctgctcctgctcctgtttcatcagctaat
gctacgtcagaggctgatgtttatggtcaagcagcatctaatctggtttcgggaagtaat
ttggagggagtaatccagcaaattcttgatataggtggagggacttgggatagggatact
gttgttcgtgctcttcgtgctgcttataataatcctgagagagctattgaatacttatat
tctggtatcccggaagttccacctgtgactcctgtccctgtgagtgggcaagttgcaaat
cctccagtgcaacctccgccacctgtgcaaccttcacctgttccttccactggacccaat
gctaatcctctagatctctttccacagggcatccccaacacaggttcaggtgctgcaggt
gtgggaactcttgattttttacggaacagtcaacagttccaagcattgagagctatggtg
caggctaacccacagatattgcagcctatgcttcaagagttggggaaacaaaatcctcat
ctaatgaggcttattcaagagcatcaggctgactttcttcgtctcatcaatgaacctgtt
gaaggtggagaagggaatatcttggggcagctgcaagcagctatgccacaggcggtaaca
gttacacccgaggaacgtgaagcaatagaacgtcttgaagcaatgggttttgatcgggca
cttgtattagaagtgttttttgcctgcaacaagaatgaggagctggctgccaactacctt
ctagatcatatgcatgagttcgaggaataa
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