Manihot esculenta (cassava): 110618587
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Entry
110618587 CDS
T05761
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110618587
03015 mRNA surveillance pathway
110618587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110618587
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110618587
mRNA cycle factors
P-body specific factors
110618587
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
110618587
NCBI-ProteinID:
XP_021617444
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All DBs
Position
7:30710403..30723237
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AA seq
1202 aa
AA seq
DB search
MDHHEDEYRVAAEPQAKQEDEEAVARLEEMKKSIEAKVALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQKEGLMDELRNVNLSKFVSEAVTAICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPCLVQGLLKVFFPGKSGEDLEVDRNSKAMKKRSTLKLLLELYFVGVIED
SSIFINIIKDLTLTSVEHLKDRDATQTNLTLLASFARQGRIFLGLPLSGQEIYEEFFKGL
NITADQKKIFRKAFNAYFDAVSELLQSEHASLRQMEHENAKILNAKGELSDENVASYEKL
RKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTTGEDSSSPAAGKDSSVLEALWDDED
TRAFYECLPDLRAFVPAVLLGEAEPKVNEQSAKAQEQPSEVAPESDQGQPSQDTAESSAD
SGTLQEGKGTEKGKDKEEKDKEKAKDPEKDKGKEKDAERKGDVEKEKVKGLEGTSLDALL
QRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVKALFNVPRTSLELLPYYSRMVATLSTCM
KDVSSILVQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFTCLKACLD
DFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYY
LCKPPERSARVSKVRPPLYQYIRKLLFSDLDKSSIEHVLRQLRKLPWNECEAYLLKCFMK
VHKGKYGQINLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLEINDYGMQQRRIAHMRFL
GELYNYELVDSSVIFETLYLILVFGHDTPEQDVLDPPEDCFRIRMVITLLETCGHYFDRG
SSKRKLDRFLIHFQRYVLSKGALPLDIEFDLQDLFAELRPSMTRHSSIDEVNSALIELEE
NERSGSSSTDKLNSEKHSDTEKPSSRHPSNALSANGENLVNGGEENGGIHEDIGDSDTDS
GSGTLEQEGHDDDELDEENHDDGSETEDVDDDDDGGEPVSEEDDEVHVRQKVAEVDPVEA
ANFEQELRAVMQESMEQRRQELRGRPTLNMVIPMSVFEGSTRDHGRGVGGESGDEALDDE
TGGSKEVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEAAEFEEKQDIKRLVLEYNDR
EEEENYGLGTQTLNWMPSGSNRVGSRGSMWEGSSGRGTGSRHRHQHQHQHHSGSGVYHGR
RR
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaagatgagtaccgagttgcagctgaaccacaggccaagcaagaggat
gaggaagctgtggctcgacttgaggaaatgaagaaatctattgaggcaaaagttgctctt
cgtcaaagcaatttgaatcctgaaaggcctgattcaggattccttaggacattggattca
agcatcaagcgaaatacagcagttattaaaaaattaaagcagataaatgaagagcagaag
gaagggctaatggacgagttgcgaaatgtaaaccttagcaaatttgttagtgaagctgtg
acagctatttgtgatgcaaagcttagaacttctgacatacaagcagcagttcagatatgc
tctttgcttcatcaaaggtacaaagacttctcaccatgtctggtgcaagggcttttgaag
gtcttttttcctggaaaatccggggaagacttggaagtggacagaaactcaaaagctatg
aagaagcggagcaccttgaaactccttttggaactatactttgttggagtaatagaagac
agcagtatttttatcaatatcattaaggatcttactcttactagtgtggaacacttgaag
gatcgagatgctactcagacaaatctgactctccttgctagttttgctagacaagggaga
attttcctaggactgcctctttctggacaagaaatttatgaagagtttttcaagggcctt
aatatcacagcagatcagaagaaaatattcaggaaagcctttaatgcttatttcgatgct
gtatcggaactacttcagtctgagcatgcttctcttcgccaaatggagcatgaaaatgcg
aagattttgaatgctaagggagaactcagtgatgaaaatgttgcatcatatgaaaagctt
cgaaaatcttatgaccatttatatcgcaatgtttcatctttggctgaagccctagacatg
caacctccagtgatgcctgaagatggccacaccactagggttacaactggagaggattcc
tcatcacctgctgctgggaaggattcttctgtgcttgaagctttgtgggatgatgaagat
actagagcattttatgaatgcttaccagatctcagagcatttgttccagcagtattattg
ggagaagcggagccgaaagtaaatgaacaatctgcaaaggctcaagagcaaccaagtgag
gtggcacctgaatcagaccaaggccaacctagtcaagatactgcggagtcctctgcagac
tctggtactttgcaggagggaaaaggcactgagaaaggaaaggataaggaagaaaaggat
aaagaaaaagctaaggatccagaaaaagataagggtaaagaaaaggatgcagaaagaaaa
ggagatgttgaaaaggagaaagttaaaggtcttgaagggacaagcttggatgctttactg
caaagacttcctggatgcgtcagtcgtgaccttattgatcaattgactgtggagttttgt
tacttaaattcaaaatcaaatcggaaaaagcttgtaaaagcattgttcaatgtgcctaga
acgtctctagaactgctaccatactactctcgaatggttgccacactatcaacttgtatg
aaggatgtttcttctatccttgtacagatgttagaagaggagttcaatttcttgttaaat
aagaaggatcaaatgaacattgaaacaaagatcagaaacattagatttattggagagctt
tgcaaatttagaattgcaccagccggtcttgtcttcacttgtttgaaggcttgtttagat
gattttactcatcataacattgatgttgcttgcaatctgcttgagacatgtggccgtttt
ctttatcgttctcctgaaactactgtgcggatggctaatatgttagagattttaatgcgc
ttgaaaaatgtaaaaaatttggatccccggcatagcacccttgtagaaaatgcttactat
ctgtgcaaaccacctgaaagatctgcacgggtgtctaaagtccgtcctcctctatatcag
tatattcgaaagctgcttttctcggatctagataagtcttccattgagcatgtgctgagg
caacttcgtaaattaccatggaatgaatgtgaggcataccttttgaagtgctttatgaaa
gttcacaagggaaaatatggtcaaataaacttaattgcttctcttactgctggtttgagc
cgctatcatgatgaatttgcagttgctgttgttgacgaggttttggaggagattaggctt
gggctagaaataaatgactatgggatgcagcagaggcgaattgcccacatgcgattctta
ggagagctatacaactatgaacttgtggattcatctgtaatttttgagacgctctatttg
atccttgtttttggtcatgacacaccagagcaagatgtactggatccaccagaggattgt
ttccgcatcagaatggttatcactcttcttgagacctgtggacattactttgaccgaggt
tcttctaagaggaaacttgatcgatttctaatacatttccagagatatgttctcagcaaa
ggtgcactaccacttgacattgaatttgacttacaggacttatttgctgaattacgccct
agcatgactcgacattcatccattgatgaagttaattcagctcttatagaacttgaggag
aatgaacgaagtggttcaagttcaactgataagctcaatagtgagaaacactctgacact
gaaaaaccttctagcaggcatccttccaatgccctctctgccaatggagaaaatcttgtg
aatggtggtgaggaaaatggtggaatccacgaggatattggtgacagcgacactgattca
ggcagtggcacccttgagcaggagggtcatgatgatgatgagctggacgaagagaatcat
gatgatggatctgagacagaggatgttgatgatgatgatgatgggggtgaacctgtttct
gaggaggatgatgaagtccatgtcagacaaaaagttgctgaggtggatcctgtggaagct
gcaaattttgagcaggagctaagggcagtaatgcaggaaagcatggagcagcgcaggcaa
gagttgcggggtcggccgacattaaatatggtgatacctatgagcgtgtttgaggggtcc
accagagatcatggaaggggggttggaggggaaagtggtgatgaggcattggatgatgag
actggaggaagcaaggaggttcaggtgaaagtacttgtgaagcgtgggaacaagcaacag
acaaagcagatgtacattcctagggattgcactcttgtgcagagcacaaaacagaaagaa
gcagctgagtttgaagagaaacaagatattaagaggcttgtcttggagtataatgacaga
gaagaggaggagaattatggattaggaacccagacattgaattggatgcctagtggtagc
aacagagttggcagccgtggcagtatgtgggaaggaagcagtggtaggggcactggatca
cgacatcgacatcagcatcagcatcagcatcattcaggcagtggggtttatcatggcagg
aggaggtga
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