Manihot esculenta (cassava): 110618655
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Entry
110618655 CDS
T05761
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110618655
09123 Folding, sorting and degradation
03018 RNA degradation
110618655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110618655
03041 Spliceosome [BR:
mesc03041
]
110618655
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110618655
mRNA degradation factors
5'-3' decay
Lsm complex
110618655
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110618655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
110618655
NCBI-ProteinID:
XP_021617537
LinkDB
All DBs
Position
1:36242188..36244912
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AA seq
98 aa
AA seq
DB search
MSTGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSHLDLLNLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtctactggccctggacttgagtctcttgtagatcaaacaatttcagttataaccaat
gatggccgcaacatagtggggatcttgaaaggcttcgaccaggccacaaatatcatccta
gatgaatctcatgaacgagtttattctactaaggaaggcgttcaacaacttgtcctgggt
ttgtacataataaggggtgacaacataagcattgttggggaactggatgaagagcttgat
tcacaccttgatttattaaacctaagagctcatcctctcaagccagtcattcattga
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