KEGG   Manihot esculenta (cassava): 110618655
Entry
110618655         CDS       T05761                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03018  RNA degradation
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110618655
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110618655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110618655
   03041 Spliceosome [BR:mesc03041]
    110618655
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110618655
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110618655
Spliceosome [BR:mesc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110618655
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 110618655
NCBI-ProteinID: XP_021617537
LinkDB
Position
1:36242188..36244912
AA seq 98 aa
MSTGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSHLDLLNLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtctactggccctggacttgagtctcttgtagatcaaacaatttcagttataaccaat
gatggccgcaacatagtggggatcttgaaaggcttcgaccaggccacaaatatcatccta
gatgaatctcatgaacgagtttattctactaaggaaggcgttcaacaacttgtcctgggt
ttgtacataataaggggtgacaacataagcattgttggggaactggatgaagagcttgat
tcacaccttgatttattaaacctaagagctcatcctctcaagccagtcattcattga

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