Manihot esculenta (cassava): 110619087
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Entry
110619087 CDS
T05761
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110619087
03015 mRNA surveillance pathway
110619087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110619087
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110619087
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_10
RRM_3
DUF515
Motif
Other DBs
NCBI-GeneID:
110619087
NCBI-ProteinID:
XP_021618032
LinkDB
All DBs
Position
7:33692006..33692569
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AA seq
153 aa
AA seq
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MVKPKRGRLPPSDSGSGSLSRSRSKSWSRSYSGSDSRSSPRSWSLSSRSRSKSFSSSSSP
SRSLSSVSRSPTAHRKSFAVVAKNVHEGHLKEIFSNFGEVVHVELAIDHTVNLPKGYGYV
ELKARADAEKALIYMDGTQIDGNVVRARFTLPP
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccaaagcgaggccgtttgccgccttccgattctggctcgggttcattgtcc
aggtcccgctcgaagtcatggtcacgctcttactctggttcagattctcgctccagccca
cgctcctggtctttgtcctcccgatctcgttccaaatcgttctcttcatcctcctcccct
tctcgcagcctcagctccgttagtcgcagccctactgctcatagaaagagtttcgctgta
gtggctaagaatgtgcatgaaggccatttaaaagagatattcagtaactttggtgaggtt
gtacatgtggagctggcaattgaccatactgttaatcttcccaagggatatggatatgtt
gaactcaaggcaagggctgatgctgagaaggccttaatatacatggatgggacccagatt
gatggcaatgttgttcgagcaaggttcacattacctccgtga
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