Manihot esculenta (cassava): 110619127
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Entry
110619127 CDS
T05761
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110619127
03036 Chromosome and associated proteins [BR:
mesc03036
]
110619127
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
110619127
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110619127
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
110619127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
110619127
NCBI-ProteinID:
XP_021618069
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All DBs
Position
7:31514395..31522743
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AA seq
739 aa
AA seq
DB search
MSQFLEILRCILCCVEDYGDENEYETFYVNTTREPRVSRSVIPFNFKAIFGSRSSDSVNS
VESIYDVSSSFDSNRRYVRIPSHSPETYSSWLPPSSQTTTRASSSYRPQSLTTDVTSSKP
SQASLLSPASQTSSRSSPQAPKLPLSSKKAQPLIPEIPSSKPSPVSLTSPTSSLKPSPQT
PSYSLNPSVSLPKPSTADSKPSPLSSATSAFSFKPVPKAPPSSLDASLSSSKPSLTSSSN
VIKIPDIQNSCSESSPSPSKPLPSFKPTLAPASSNITGQQTKANYVWVRKDTLPIYMTPK
DIQDLIKKDMVPEVLKKPLTLSTYKDYFAALLYAEDFYIEKWSKFKLVDITLKLQKASVF
KLSYFTESHEKEDKTFVTFEIDACRERRPFLISRDFVFARPSGNKTEPFQGVIYRVVRST
TVLVEFGDDFDAQHHSSRKYDVSFSFNRVCLKRAHQAIEAASDPLFKDYIFPDCNFRKRC
SESTPSYCNYKLDADQMSAVCQILSFQGPPPYLIEGPLCVTKATRHEISQLSRTGLVVQE
AVLEFYRSSQKHRILICAPNNSTCDLLTRSLKKHIPKSDMFRANAAFREIDGVPTDIRSS
CVYKGECFSCPRLQELRKFRVILSTYVSSFRLCNEGIAAGHFSHIFLVDASSATEPEVMV
ALANLANKNTAVIVTGAPGNYPGWVRSDIARENGLMHSYFERLHERNPYARLDPMFITKL
VSFESKSDDNQSFDPFFFV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagtttcttgaaatcttgcgttgtattctttgttgtgttgaagattatggagat
gaaaatgaatatgaaacattttatgtaaacactacacgggaaccaagagtgtctcgaagt
gttattcctttcaatttcaaggcaatattcggttcaaggtcaagtgattctgtaaactca
gtggaaagcatttatgatgtgtctagtagttttgatagtaataggagatatgtacgtata
ccttcccatagtccagaaacatattcctcttggctgccaccttcatcccaaactacaaca
agagcatcttcttcgtaccgacctcaatcgctaacgacagatgtgacttcttccaaacca
tcacaggcatcactgctatctcctgcatcccaaacttcgtctagatcatcccctcaggca
ccaaaactcccactatcttcaaaaaaagcgcaaccattaataccagaaataccttcttct
aaaccatctccagtgtctcttacatccccaacttcttcattaaaaccatcccctcaaaca
ccttcatattctttaaatccatctgtatccctccctaaaccttcaacagctgattctaaa
ccatctcctttatcctctgcaacttcagcattttcttttaaacctgttcctaaagcacct
ccttcttccttggacgcttctctatcatcgtccaagccctccctgacttcttcctcaaat
gtcatcaaaattcctgatatccaaaactcctgttctgagtcatctccatcaccgtctaag
ccccttccatcttttaagccaacactggctccagcttcctcaaatatcaccggtcaacag
acaaaagccaactatgtatgggttcgaaaggatacattacctatttatatgactcccaag
gatatacaagatttgatcaagaaagacatggtccctgaagttctgaaaaagccattgact
ttgtcaacgtataaggattattttgctgctcttctttatgctgaagacttctacattgag
aaatggagcaagttcaaattggtggatatcacattaaaattgcaaaaagcatcagtcttt
aaactatcatacttcacagagagtcatgaaaaggaagataaaacctttgtgacatttgag
attgacgcatgtcgtgagaggcggccatttctaatatcaagggactttgtctttgcaaga
ccctcaggaaataagactgagccatttcagggtgttatttatcgtgtggtgaggagcaca
actgtgctggttgaatttggtgatgattttgatgctcagcatcattcatctcgcaaatat
gatgttagcttctcatttaacagagtgtgtttaaaaagggctcatcaagcaattgaagct
gcctcagatcctttatttaaagattacattttccctgattgtaacttcagaaagagatgc
tctgaatcaacaccttcatattgtaattataaacttgatgccgatcaaatgtccgcagtt
tgtcagatcttatcctttcaggggccacctccttatctcattgagggcccactctgtgta
actaaagctacaaggcatgaaattagtcaactatcaagaactggattggttgtccaagaa
gctgtgctagaattttatcgaagctctcaaaagcaccgaattctcatatgtgcacctaat
aacagcacatgtgatttgttgacaagaagcttgaagaagcacattcctaaatcagatatg
tttcgagctaatgctgcatttcgagagatagatggggtgcctactgatatacgctcgtca
tgtgtatataaaggtgaatgtttttcttgcccgcgccttcaggaactccggaagtttaga
gtaatattatcaacttatgtgagtagcttccggctttgtaacgaaggcattgctgctgga
cattttagtcacattttcttggtggatgcctcatcagctactgagcctgaggtaatggtg
gcactggctaatttggcgaacaagaacacagctgtaatagtcactggtgcaccaggaaac
tatccaggttgggtgcgctctgatatcgctagagaaaatggactaatgcattcatacttc
gaaagacttcatgagagaaatccatacgctagacttgatccaatgtttatcacaaagctg
gtcagcttcgagtccaaatcagatgataaccaaagctttgaccctttcttctttgtgtag
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