Manihot esculenta (cassava): 110619211
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Entry
110619211 CDS
T05761
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110619211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110619211
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110619211
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
110619211
NCBI-ProteinID:
XP_021618191
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Position
7:complement(31310773..31316174)
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AA seq
898 aa
AA seq
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MDRSSDKEKSSKRSREERDRDSTKDHHDRDHKHRSRDKDRDDRYRDSDSLHRHRRSDRES
HRDHHKSSRHEDRESCRDRESKRERSHDPREDREGSRDRRERSHEPLSDHKSSLSIREDH
ERSRERSYNRIEEREGSIDGRDTELKREISYESADLKYEARRKRKERGNSEDRLEREKRV
RVSEEKRERRRFEDKVKEEDSIDKYDNNSSIEDAKRVESSKVKEEVNDEPTGGNTANRGL
PTENGATLESFAKTSSIVHEKSVGTFHPLPTKVSSISNTNENKGVSITRSHEVPGKSSTD
GTSSAAGKSGSLSLDALAKAKKALQMQKELAEKLKKIPLLSKGASSSSDNNTPPILKEEL
KAQYSGIGVQRETPPISTTSISAGTMSSALTAGNPPASVMEAFPGLASIPNIEAVKRAQE
LAAKMGFRQDPEFAPLINLFPGQMPEEVSVPQKPTRAPVLRIDALGREIDEHGNVVNVTK
PSNLSTLKVNINKQKKDAFQILKPELEVDPESNPHFDQSMGINKNKLLRPKRMSFQFVEE
GKWSKEAEMMKLKSQFGEERAKDMKARQALHAKAKAAPDINPNLIEVSQRVIIKEKTKEP
IPEIEWWDVPLLPSGSYDGIDDGNASDKLKMEKITIYVEHPRPIEPPAEPAPPPPQPLKL
TKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEI
RSAAAEREQAHIDRNIARKLTPAERREKKEKKLFDDPNNVETIVSVYKINDLSHKKTRFK
VDVNAQENRLTGCVVISEGINVVVVEGGSKSIKRYGKLMLRRINWAEAVEEEEEDGDDNE
DKPVNKCMLVWQGSVAKPSFNRFFVHECVTEAAARKVFADAGVGHYWDLAVNFSDDQV
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggatcggtcctctgataaggagaaatcctccaaacgctcccgagaagaacgcgaccgg
gactccaccaaagaccatcatgaccgggaccacaaacaccgatcccgagacaaggaccga
gacgataggtatcgagattccgattctctccaccgccaccgtcgttcggaccgggaaagc
catcgcgaccatcacaagtcatcaaggcatgaagatcgagagagctgtagagaccgtgaa
tctaagcgcgaacgatcacacgacccgagagaggatagggaggggagtagggatcggcgc
gagcggtctcacgagccactaagcgatcacaaatcttccttgtcaatccgtgaggaccat
gagcggtctcgcgagaggtcctacaatcggattgaggagagagaggggagcattgatgga
cgcgatacagaattgaagagagagatatcgtatgaaagcgcagacctgaagtatgaagct
agaaggaagaggaaagaaagaggaaatagtgaggatagacttgagcgggaaaagagggtt
agggtttcagaagagaagagagagaggaggagatttgaggacaaagtaaaagaagaggat
agtattgataagtatgacaataatagtagtattgaagatgcaaagagagtagaatcgagt
aaggtgaaagaagaagtgaatgatgagccaactggtggtaatactgccaatcgcggcctt
ccaactgagaatggtgccaccctggaatcatttgctaagacatcaagcattgtgcatgag
aaatctgtgggaacttttcatcctcttcctaccaaggtatcttcaatttcaaacacaaat
gaaaataagggagttagtattaccagatctcatgaggttcctggaaaatctagtacagat
gggacatcatcagctgctgggaaaagtggaagtctatcccttgatgctttagcaaaagct
aaaaaagctctacaaatgcagaaggagctggcggagaagctgaaaaaaatacctctattg
agcaagggtgctagctcaagttcagataataatacaccacccatattaaaggaggaactg
aaagcacagtattctggtattggagtgcagagggaaactccacccatatccaccacctct
atttcagcaggaacaatgtcaagtgcattgactgctgggaatccacctgcaagtgtcatg
gaagcttttcctgggcttgccagtatacccaatattgaagctgttaaacgtgctcaggaa
cttgctgctaaaatgggattccggcaggatcctgagtttgctcctcttataaatttgttc
cctggccagatgccagaggaagtttctgtaccacaaaagcctactagggcccctgttctt
cgtatagatgcacttggtcgggaaatagatgaacatggaaatgtagtgaatgtgaccaag
ccaagcaacctaagcacactaaaggttaacatcaacaagcaaaaaaaggatgcatttcag
attcttaaacctgaattggaagtggatcctgaatcaaatcctcactttgatcaaagcatg
ggcataaataagaataagcttttgaggcctaaaaggatgagcttccagtttgtagaggaa
ggaaaatggtcgaaggaagctgaaatgatgaaattgaagagtcaatttggagaagaaagg
gcaaaagatatgaaggcaagacaagcactacatgcaaaggcaaaggctgctcctgatata
aatcccaatttgatagaggtatcacagagagttataataaaagagaagactaaggagcca
attcctgaaattgagtggtgggatgtacctcttctgcctagtggtagctatgatggaatt
gatgatggtaatgcaagtgataagttgaagatggagaagatcacaatctatgtagaacac
ccacgtcctatcgagccccctgctgagccagctcctccaccacctcagcctttgaagcta
acaaagaaagagcagaagaagctccgcacccaacgtcggttggctcgggaaaaagataga
caggagatgattaggcaaggcttgattgaacccccaaagcctaaagtcaaaatgagtaat
ttaatgaaagttcttggctctgaagctacccaagatcccacaaaacttgagaaggaaata
cgtagtgcagctgctgagcgtgagcaagctcatattgacaggaacattgcacgcaagctc
actcctgctgaacgccgtgagaaaaaggagaagaagctcttcgatgacccaaataatgta
gaaactattgtttctgtctacaaaatcaatgacctgtcacacaagaaaactcgcttcaaa
gttgatgttaatgctcaagagaaccgtttgactggttgtgtcgtgatttctgaaggcatt
aatgttgtggtagttgaaggaggaagcaaatccattaagaggtatgggaagctaatgctt
aggcgcataaactgggctgaagctgtagaagaggaggaagaagatggagatgacaatgag
gataaacctgtgaacaaatgcatgttggtgtggcaaggcagtgttgccaaaccaagcttc
aataggttttttgtacacgagtgtgtaacagaagctgcagcacggaaagtgtttgctgat
gcaggtgttggtcactattgggatcttgcagtcaacttctctgatgatcaagtatga
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