KEGG   Manihot esculenta (cassava): 110619353
Entry
110619353         CDS       T05761                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03018  RNA degradation
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110619353
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110619353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110619353
   03041 Spliceosome [BR:mesc03041]
    110619353
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110619353
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110619353
Spliceosome [BR:mesc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110619353
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 110619353
NCBI-ProteinID: XP_021618435
LinkDB
Position
1:38644169..38649161
AA seq 148 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEAKSRSDRRPPGVGRGRGRGREDGGRPVKGIGRGLDDGS
AKAAGGGRGRGGSGGKTGGNRGAGRGRG
NT seq 447 nt   +upstreamnt  +downstreamnt
atgcttcctctttctctacttaagactgcacagggccatccaatgttggtggaactgaaa
aatggggagacttacaatggacatttggtcaattgcgacacttggatgaatatccatctc
cgtgaagtcatctgtacctctaaggatggagataggttttggagaatgccagaatgctat
atacgtggaaatacaattaagtatcttcgagttcctgatgaggttattgataaagttcag
gaagaagccaagagccgctcagatcggaggccacctggggtggggcgtggaagaggaaga
ggtagagaggatggtggaaggccagtaaaaggcattgggcgaggccttgatgatggaagt
gctaaggctgctggaggaggccgtggcagaggtggctcaggtggaaagacaggtggaaac
agaggtgcagggcggggcaggggctaa

DBGET integrated database retrieval system