Manihot esculenta (cassava): 110619353
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Entry
110619353 CDS
T05761
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110619353
09123 Folding, sorting and degradation
03018 RNA degradation
110619353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110619353
03041 Spliceosome [BR:
mesc03041
]
110619353
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110619353
mRNA degradation factors
5'-3' decay
Lsm complex
110619353
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110619353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
110619353
NCBI-ProteinID:
XP_021618435
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Position
1:38644169..38649161
Genome browser
AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEAKSRSDRRPPGVGRGRGRGREDGGRPVKGIGRGLDDGS
AKAAGGGRGRGGSGGKTGGNRGAGRGRG
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctctacttaagactgcacagggccatccaatgttggtggaactgaaa
aatggggagacttacaatggacatttggtcaattgcgacacttggatgaatatccatctc
cgtgaagtcatctgtacctctaaggatggagataggttttggagaatgccagaatgctat
atacgtggaaatacaattaagtatcttcgagttcctgatgaggttattgataaagttcag
gaagaagccaagagccgctcagatcggaggccacctggggtggggcgtggaagaggaaga
ggtagagaggatggtggaaggccagtaaaaggcattgggcgaggccttgatgatggaagt
gctaaggctgctggaggaggccgtggcagaggtggctcaggtggaaagacaggtggaaac
agaggtgcagggcggggcaggggctaa
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